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Removing white spaces and commenting schemas
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
bwamem-gatk-report-wf.cwl
diff --git
a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index 56efe6545d928b4fafdb6b79bce6f8a821761e44..ee8ae4fdce5682340403ba4070a10fc52e1cb1f6 100644
(file)
--- a/
WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/
WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@
-6,11
+6,11
@@
requirements:
- class: SubworkflowFeatureRequirement
inputs:
- class: SubworkflowFeatureRequirement
inputs:
- fastq1:
+ fastq1:
type: File
format: edam:format_1930 # FASTQ
label: One of set of pair-end FASTQs (R1)
type: File
format: edam:format_1930 # FASTQ
label: One of set of pair-end FASTQs (R1)
- fastq2:
+ fastq2:
type: File
format: edam:format_1930 # FASTQ
label: One of set of pair-end FASTQs (R2)
type: File
format: edam:format_1930 # FASTQ
label: One of set of pair-end FASTQs (R2)
@@
-91,7
+91,7
@@
steps:
sample: sample
out: [bam]
samtools-sort:
sample: sample
out: [bam]
samtools-sort:
- run: samtools-sort.cwl
+ run: samtools-sort.cwl
in:
bam: bwamem-samtools-view/bam
sample: sample
in:
bam: bwamem-samtools-view/bam
sample: sample
@@
-124,7
+124,7
@@
steps:
reportfunc: reportfunc
headhtml: headhtml
tailhtml: tailhtml
reportfunc: reportfunc
headhtml: headhtml
tailhtml: tailhtml
- out: [report]
+ out: [report]
s:codeRepository: https://github.com/arvados/arvados-tutorial
s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
s:codeRepository: https://github.com/arvados/arvados-tutorial
s:license: https://www.gnu.org/licenses/agpl-3.0.en.html