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Updating labels and hints on cwl
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
bwamem-gatk-report-wf.cwl
diff --git
a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index f1cfad4cac14af5825c1cd14209e82ed075b1f93..86d1e1051114ca42f41e956aae55c1d3d9d0028c 100644
(file)
--- a/
WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/
WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@
-57,18
+57,18
@@
inputs:
outputs:
qc-html:
type: File[]
outputs:
qc-html:
type: File[]
- label: FASTQ QC report
+ label: FASTQ QC report
s
format: edam:format_1964 # HTML
outputSource: fastqc/out-html
qc-zip:
type: File[]
format: edam:format_1964 # HTML
outputSource: fastqc/out-html
qc-zip:
type: File[]
- label: Zip file of FASTQ QC report and associated data
+ label: Zip file
s
of FASTQ QC report and associated data
outputSource: fastqc/out-zip
gvcf:
type: File
outputSource: haplotypecaller/gatheredgvcf
format: edam:format_3016 # GVCF
outputSource: fastqc/out-zip
gvcf:
type: File
outputSource: haplotypecaller/gatheredgvcf
format: edam:format_3016 # GVCF
- label: GVCF generated from GATK
+ label: GVCF generated from GATK
Haplotype Caller
report:
type: File
outputSource: generate-report/report
report:
type: File
outputSource: generate-report/report