outputs:
qc-html:
type: File[]
- label: FASTQ QC report
+ label: FASTQ QC reports
format: edam:format_1964 # HTML
outputSource: fastqc/out-html
qc-zip:
type: File[]
- label: Zip file of FASTQ QC report and associated data
+ label: Zip files of FASTQ QC report and associated data
outputSource: fastqc/out-zip
gvcf:
type: File
outputSource: haplotypecaller/gatheredgvcf
format: edam:format_3016 # GVCF
- label: GVCF generated from GATK
+ label: GVCF generated from GATK Haplotype Caller
report:
type: File
outputSource: generate-report/report