cwlVersion: v1.1
class: CommandLineTool
+$namespaces:
+ arv: "http://arvados.org/cwl#"
+ cwltool: "http://commonwl.org/cwltool#"
+
requirements:
DockerRequirement:
dockerPull: curii/bwa-samtools-picard
listing:
- $(inputs.bam)
+hints:
+ arv:RuntimeConstraints:
+ outputDirType: keep_output_dir
+
inputs:
bam: File