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Updating yml for 2 vcfs of known sites
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
helper
/
scatter-gatk-wf-with-interval.yml
diff --git
a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
index 20b5a3b916449050ff08d56180db0b316a2b6b39..bf0b9899ef04f89501df4b5c41f279b95f8150b2 100644
(file)
--- a/
WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
+++ b/
WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
@@
-16,7
+16,12
@@
sample: ERR1726424
scattercount: '32'
scattercount: '32'
-knownsites:
+knownsites1:
+ class: File
+ format: edam:format_3016
+ location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf
+
+knownsites2:
class: File
format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
class: File
format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz