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Updating yml for 2 vcfs of known sites
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
helper
/
gatk-baserecalibrator-with-interval.yml
diff --git
a/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
b/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
index d22173ff6c760014aa8d88cc6c48518e29ab0c3f..e813417d4ea1143876db4e8b877a9e3c121c4761 100644
(file)
--- a/
WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
+++ b/
WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
@@
-8,8
+8,14
@@
reference:
sample: ERR1726424
sample: ERR1726424
-knownsites:
+knownsites
1
:
class: File
class: File
+ format: edam:format_3016
+ location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf
+
+knownsites2:
+ class: File
+ format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
intervallist:
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
intervallist: