Updating yml for 2 vcfs of known sites

[arvados-tutorial.git] / WGS-processing / yml / helper / gatk-baserecalibrator-with-interval.yml

diff --git a/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml b/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
index d22173ff6c760014aa8d88cc6c48518e29ab0c3f..e813417d4ea1143876db4e8b877a9e3c121c4761 100644 (file)
--- a/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
+++ b/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
@@ -8,8 +8,14 @@ reference:
 
 sample: ERR1726424
 
-knownsites:
+knownsites1:
   class: File
+  format: edam:format_3016
+  location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf
+
+knownsites2:
+  class: File
+  format: edam:format_3016
   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
 
 intervallist: