Add workflow to generate single chromosome fastqs

[arvados-tutorial.git] / make-singlechromfastq / yml / bam2singlechromfastq-test.yml

diff --git a/make-singlechromfastq/yml/bam2singlechromfastq-test.yml b/make-singlechromfastq/yml/bam2singlechromfastq-test.yml
new file mode 100644 (file)
index 0000000..1a50a0d
--- /dev/null
+++ b/make-singlechromfastq/yml/bam2singlechromfastq-test.yml
@@ -0,0 +1,6 @@
+bam:
+  class: File
+  format: edam:format_2572
+  location: keep:df46f3dd9eb77e1cfda3fa2b5c165858+60837/marked_dupsERR2122556.sorted.bam
+sample: "ERR2122553"
+chrom: "chr19"