Adding metatdata and labels

[arvados-tutorial.git] / WGS-processing / cwl / helper / report-wf.cwl

diff --git a/WGS-processing/cwl/helper/report-wf.cwl b/WGS-processing/cwl/helper/report-wf.cwl
index 0029018394d7aa1c2dd170860196efef9ed39a3a..b53f385d85d690fbe4b7a5d241254f0add9618f4 100644 (file)
--- a/WGS-processing/cwl/helper/report-wf.cwl
+++ b/WGS-processing/cwl/helper/report-wf.cwl
@@ -7,7 +7,7 @@ inputs:
     type: File
     format: edam:format_3016 # GVCF
     label: Gathered GVCF
-  samplename:
+  sample:
     type: string
     label: Sample Name
   clinvarvcf:
@@ -38,21 +38,20 @@ steps:
     run: gvcf-to-vcf.cwl
     in:
       gvcf: gvcf
-      samplename: samplename
+      sample: sample
     out: [vcf]
-
   annotate:
     run: annotate-vcf.cwl
     in:
       vcf: gvcf-to-vcf/vcf
       clinvarvcf: clinvarvcf
     out: [reporttxt]
-
   generate-report:
     run: generate-report.cwl
     in:
       reportfunc: reportfunc
       sampletxt: annotate/reporttxt
+      sample: sample
       headhtml: headhtml
       tailhtml: tailhtml
     out: [report]