Updating docker file for fastqc

[arvados-tutorial.git] / WGS-processing / docker / fastqc / Dockerfile

diff --git a/WGS-processing/docker/fastqc/Dockerfile b/WGS-processing/docker/fastqc/Dockerfile
index 6d9badb70dd82c96df47a9ddda8f83d8f0f90a24..472bdbeb4612bccd9b28cab2c8ae4424be2b2321 100644 (file)
--- a/WGS-processing/docker/fastqc/Dockerfile
+++ b/WGS-processing/docker/fastqc/Dockerfile
@@ -3,13 +3,11 @@ USER root
 MAINTAINER Sarah Wait Zaranek <swz@curii.com>
 
 RUN apt-get update -qy
+RUN apt-get install -y apt-utils
 RUN apt-get install -qy build-essential wget cmake zlib1g-dev python-pip unzip libbz2-dev liblzma-dev libcurl4-openssl-dev libncurses-dev
+RUN apt-get update   
 
 RUN mkdir -p /usr/share/man/man1
 RUN apt-get install -qy default-jdk
 
-ADD fastqc_v0.11.9.zip /
-RUN unzip fastqc_v0.11.9.zip
-
-WORKDIR /
-
+RUN cd /tmp && wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip && unzip fastqc_v0.11.9.zip && mv FastQC /usr/local