Updating CWL for overarching workflow

[arvados-tutorial.git] / cwl / samtools-sort.cwl

diff --git a/cwl/samtools-sort.cwl b/cwl/samtools-sort.cwl
index 8f1f273adbc063596355066c05a3f69d36612c31..cc7c23f0535b4c0124652ea36712779cf84da702 100644 (file)
--- a/cwl/samtools-sort.cwl
+++ b/cwl/samtools-sort.cwl
@@ -17,9 +17,9 @@ outputs:
   out:
     type: File
     outputBinding:
-      glob: "*sorted.bam
+      glob: "*sorted.bam"
 
-runcommand: samtools
+baseCommand: samtools
 
 arguments:
   - sort