reference:
  class: File
  format: edam:format_1929
  location: keep:18657d75efb4afd31a14bb204d073239+13611/GRCh38_no_alt_plus_hs38d1_analysis_set.fna 

fullintervallist:
  class: File
  location: keep:18657d75efb4afd31a14bb204d073239+13611/full-noalt-scattered.interval_list

fastqdir:
  class: Directory
  location: keep:a146a06222f9a66b7d141e078fc67660+376237

clinvarvcf:
  class: File
  format: edam:format_3016
  location: keep:18657d75efb4afd31a14bb204d073239+13611/clinvar.vcf.gz

reportfunc:
  class: File
  location: ../src/annotation/generatereport.py

headhtml:
  class: File
  format: edam:format_2331
  location: ../src/annotation/head.html

tailhtml:
  class: File
  format: edam:format_2331
  location: ../src/annotation/tail.html

scattercount: '20'

knownsites1:
  class: File
  format: edam:format_3016
  location: keep:18657d75efb4afd31a14bb204d073239+13611/Homo_sapiens_assembly38.dbsnp138.vcf 

knownsites2:
  class: File
  format: edam:format_3016
  location: keep:18657d75efb4afd31a14bb204d073239+13611/Homo_sapiens_assembly38.known_indels.vcf.gz