WGS-processing/yml/wgs-processing-wf.yml

   1 reference:
   2   class: File
   3   format: edam:format_1929
   4   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
   5
   6 fastqdir:
   7   class: Directory
   8   location: keep:5e1324428f93c5e41aeb3d7b676de34c+186978
   9
  10 clinvarvcf:
  11   class: File
  12   format: edam:format_3016
  13   location: keep:242ba3b9049aee86ab2c72db4f3b2822+223/38/clinvar.vcf.gz
  14
  15 reportfunc:
  16   class: File
  17   location: ../src/annotation/generatereport.py
  18
  19 headhtml:
  20   class: File
  21   format: edam:format_2331
  22   location: ../src/annotation/head.html
  23
  24 tailhtml:
  25   class: File
  26   format: edam:format_2331
  27   location: ../src/annotation/tail.html
  28
  29 scattercount: '32'
  30
  31 knownsites:
  32   class: File
  33   format: edam:format_3016
  34   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz