7 dockerPull: curii/bwa-samtools-picard
8 InitialWorkDirRequirement:
13 arv:RuntimeConstraints:
14 outputDirType: keep_output_dir
18 specs: [ "https://identifiers.org/rrid/RRID:SCR_002105" ]
24 format: edam:format_2572 # BAM
25 label: Sorted BAM with labeled duplicates
30 format: edam:format_2572 # BAM
31 label: Indexed sorted BAM with labeled duplicates
41 - $(inputs.bam.basename)
43 s:codeRepository: https://github.com/arvados/arvados-tutorial
44 s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
47 s: https://schema.org/
48 edam: http://edamontology.org/
49 arv: "http://arvados.org/cwl#"
50 cwltool: "http://commonwl.org/cwltool#"
53 - https://schema.org/version/latest/schema.rdf
54 - http://edamontology.org/EDAM_1.18.owl