WGS-processing/yml/wgs-processing-wf.yml

   1 reference:
   2   class: File
   3   format: edam:format_1929
   4   location: keep:5eac1d1c03ff6404226421a8d8351cf1+6133/GRCh38_no_alt_plus_hs38d1_analysis_set.fna
   5
   6 fullintervallist:
   7   class: File
   8   location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
   9
  10 fastqdir:
  11   class: Directory
  12   location: keep:5e1324428f93c5e41aeb3d7b676de34c+186978
  13
  14 clinvarvcf:
  15   class: File
  16   format: edam:format_3016
  17   location: keep:242ba3b9049aee86ab2c72db4f3b2822+223/38/clinvar.vcf.gz
  18
  19 reportfunc:
  20   class: File
  21   location: ../src/annotation/generatereport.py
  22
  23 headhtml:
  24   class: File
  25   format: edam:format_2331
  26   location: ../src/annotation/head.html
  27
  28 tailhtml:
  29   class: File
  30   format: edam:format_2331
  31   location: ../src/annotation/tail.html
  32
  33 scattercount: '20'
  34
  35 knownsites:
  36   class: File
  37   format: edam:format_3016
  38   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz