WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml

   1 bam:
   2   class: File
   3   format: edam:format_2572
   4   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam
   5
   6 reference:
   7   class: File
   8   format: edam:format_1929
   9   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
  10
  11 fullintervallist:
  12   class: File
  13   location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
  14
  15 sample: ERR1726424
  16
  17 scattercount: '32'
  18
  19 knownsites:
  20   class: File
  21   format: edam:format_3016
  22   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz