3 edam: http://edamontology.org/
4 s:codeRepository: https://github.com/arvados/arvados-tutorial
5 s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
8 label: Scatter to convert one chromosome of bam to fastqs
10 ScatterFeatureRequirement: {}
17 format: edam:format_2572 # BAM
18 secondaryFiles: [.bai]
19 label: Alignments in BAM format
27 label: Chromosome name
34 format: edam:format_1930 # FASTQ
35 label: One of set of pair-end FASTQs (R1)
36 outputSource: bam2singlechromfastq/fastq1
41 format: edam:format_1930 # FASTQ
42 label: One of set of pair-end FASTQs (R2)
43 outputSource: bam2singlechromfastq/fastq2
47 run: bam2singlechromfastq.cwl
48 scatter: [bam, sample]
49 scatterMethod: dotproduct