3 label: Variant calling workflow for single interval
6 - class: SubworkflowFeatureRequirement
34 outputSource: selectvariants/filteredgvcf
38 run: gatk-baserecalibrator-with-interval.cwl
43 knownsites1: knownsites1
44 intervallist: intervallist
47 run: gatk-applyBSQR-with-interval.cwl
52 intervallist: intervallist
53 recaltable: basecalibrator/recaltable
56 run: gatk-haplotypecaller-with-interval.cwl
59 bam: applyBQSR/recalbam
61 intervallist: intervallist
64 run: gatk-selectvariants.cwl
66 gvcf: haplotypecaller/gvcf
71 s:codeRepository: https://github.com/arvados/arvados-tutorial
72 s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
75 s: https://schema.org/
76 edam: http://edamontology.org/
79 - https://schema.org/version/latest/schema.rdf
80 - http://edamontology.org/EDAM_1.18.owl