7 dockerPull: curii/bwa-samtools
8 ShellCommandRequirement: {}
14 arv:RuntimeConstraints:
16 outputDirType: keep_output_dir
20 specs: [ "https://identifiers.org/rrid/RRID:SCR_002105" ]
26 format: edam:format_2572 # BAM
27 label: Alignments in BAM format
35 format: edam:format_2572 # BAM
50 - $(inputs.sample).sorted.bam
52 s:codeRepository: https://github.com/arvados/arvados-tutorial
53 s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
56 s: https://schema.org/
57 edam: http://edamontology.org/
58 arv: "http://arvados.org/cwl#"
59 cwltool: "http://commonwl.org/cwltool#"
62 # - https://schema.org/version/latest/schema.rdf
63 # - http://edamontology.org/EDAM_1.18.owl