cwl/helper/generate-report.cwl

   1 cwlVersion: v1.1
   2 class: CommandLineTool
   3
   4 requirements:
   5   DockerRequirement:
   6     dockerPull: curii/clinvar-report
   7
   8 hints:
   9   ResourceRequirement:
  10     ramMin: 10000
  11     coresMin: 4
  12
  13 inputs:
  14   reportfunc:
  15     type: File
  16   sampletxt:
  17     type: File
  18   headhtml:
  19     type: File
  20   tailhtml:
  21     type: File
  22
  23 outputs:
  24   report:
  25     type: File
  26     outputBinding:
  27       glob: "*html"
  28
  29 baseCommand: python
  30
  31 arguments:
  32   - $(inputs.reportfunc)
  33   - $(inputs.sampletxt)
  34   - $(inputs.sampletxt.basename)
  35   - $(inputs.headhtml)
  36   - $(inputs.tailhtml)