5 - class: SubworkflowFeatureRequirement
6 - class: ScatterFeatureRequirement
34 outputSource: bwamem-gatk-report/gvcf
37 outputSource: bwamem-gatk-report/report
41 run: ./helper/getfastq.cwl
44 out: [fastq1, fastq2, sample]
47 run: ./helper/bwamem-gatk-report-wf.cwl
48 scatter: [fastq1, fastq2, sample]
49 scatterMethod: dotproduct
51 fastq1: getfastq/fastq1
52 fastq2: getfastq/fastq2
54 sample: getfastq/sample
55 knownsites: knownsites
56 scattercount: scattercount
57 clinvarvcf: clinvarvcf
58 reportfunc: reportfunc
61 out: [qc-html,qc-zip,gvcf,report]