WGS-processing/yml/wgs-processing-wf.yml

   1 sample: ERR1726424
   2
   3 reference:
   4   class: File
   5   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
   6
   7 fastqdir:
   8   class: Directory
   9   location: keep:5e1324428f93c5e41aeb3d7b676de34c+186978
  10
  11 clinvarvcf:
  12   class: File
  13   location: keep:242ba3b9049aee86ab2c72db4f3b2822+223/38/clinvar.vcf.gz
  14
  15 reportfunc:
  16   class: File
  17   location: ../src/annotation/generatereport.py
  18
  19 headhtml:
  20   class: File
  21   location: ../src/annotation/head.html
  22
  23 tailhtml:
  24   class: File
  25   location: ../src/annotation/tail.html
  26
  27 scattercount: '32'
  28
  29 knownsites:
  30   class: File
  31   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz