5 - class: SubworkflowFeatureRequirement
33 outputSource: selectvariants/filteredgvcf
37 run: gatk-baserecalibrator-with-interval.cwl
42 knownsites1: knownsites1
43 intervallist: intervallist
46 run: gatk-applyBSQR-with-interval.cwl
51 intervallist: intervallist
52 recaltable: basecalibrator/recaltable
55 run: gatk-haplotypecaller-with-interval.cwl
58 bam: applyBQSR/recalbam
60 intervallist: intervallist
63 run: gatk-selectvariants.cwl
65 gvcf: haplotypecaller/gvcf