WGS-processing/yml/helper/gatk-applyBQSR-with-interval.yml

   1 bam:
   2   class: File
   3   format: edam:format_2572
   4   location: keep:79407f4f0d46a44fcc9c377461ee85fc+53752/marked_dupsERR1726424.sorted.bam
   5
   6 reference:
   7   class: File
   8   format: edam:format_1929
   9   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
  10
  11 sample: ERR1726424
  12
  13 recaltable:
  14   class: File
  15   location: keep:fdce030a5036edb9b821222e316ee706+143/ERR1726424_recal_data.table
  16
  17 intervallist:
  18   class: File
  19   location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list