1 #!/usr/bin/env cwl-runner
7 dockerPull: "quay.io/biocontainers/star:2.7.5c--0"
12 format: http://edamontology.org/format_1930
15 prefix: "--genomeFastaFiles"
28 prefix: "--sjdbGTFfile"
33 prefix: "--sjdbOverhang"
38 prefix: "--sjdbFileChrStartEnd"
43 prefix: "--genomeSAindexNbases"
48 prefix: "--genomeChrBinNbits"
50 baseCommand: [STAR, --runMode, genomeGenerate]
52 arguments: [--runThreadN, $(runtime.cores)]
58 glob: ./$(inputs.IndexName)/