WGS-processing/yml/wgs-processing-wf.yml

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   2   class: File
   3   format: edam:format_1929
   4   location: keep:18657d75efb4afd31a14bb204d073239+13611/GRCh38_no_alt_plus_hs38d1_analysis_set.fna
   5
   6 fullintervallist:
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   8   location: keep:18657d75efb4afd31a14bb204d073239+13611/full-noalt-scattered.interval_list
   9
  10 fastqdir:
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  12   location: keep:a146a06222f9a66b7d141e078fc67660+376237
  13
  14 clinvarvcf:
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  16   format: edam:format_3016
  17   location: keep:18657d75efb4afd31a14bb204d073239+13611/clinvar.vcf.gz
  18
  19 reportfunc:
  20   class: File
  21   location: ../src/annotation/generatereport.py
  22
  23 headhtml:
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  25   format: edam:format_2331
  26   location: ../src/annotation/head.html
  27
  28 tailhtml:
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  30   format: edam:format_2331
  31   location: ../src/annotation/tail.html
  32
  33 scattercount: '20'
  34
  35 knownsites1:
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  37   format: edam:format_3016
  38   location: keep:18657d75efb4afd31a14bb204d073239+13611/Homo_sapiens_assembly38.dbsnp138.vcf
  39
  40 knownsites2:
  41   class: File
  42   format: edam:format_3016
  43   location: keep:18657d75efb4afd31a14bb204d073239+13611/Homo_sapiens_assembly38.known_indels.vcf.gz