5 - class: DockerRequirement
6 dockerPull: curii/clinvar-report
7 - class: ShellCommandRequirement
14 stdout: $(inputs.vcf.nameroot).txt
28 valueFrom: $(inputs.clinvarvcf.path)
32 - {valueFrom: '|', shellQuote: false}
36 valueFrom: "INFO/ALLELEID>=1"
37 - {valueFrom: '|', shellQuote: false}
41 valueFrom: "%ID\t%CHROM\t%POS\t%REF\t%ALT\t%INFO/ALLELEID\t%INFO/CLNSIG\t%INFO/CLNDN\t%INFO/AF_ESP\t%INFO/AF_EXAC\t%INFO/AF_TGP[\t%GT]\n"