From: Ward Vandewege Date: Wed, 13 May 2020 20:45:35 +0000 (-0400) Subject: 16429: add GKE integration test X-Git-Url: https://git.arvados.org/arvados-k8s.git/commitdiff_plain/699ed1d103ccf0a687615939454d2655961300c3 16429: add GKE integration test Arvados-DCO-1.1-Signed-off-by: Ward Vandewege --- diff --git a/charts/arvados/config/config.yml b/charts/arvados/config/config.yml index 292e1c4..2896474 100644 --- a/charts/arvados/config/config.yml +++ b/charts/arvados/config/config.yml @@ -5,6 +5,7 @@ Clusters: {{ .Values.uuidPrefix }}: SystemRootToken: wifieSh9voog8Bae0ahgeG5aechee4Ahloo0Aiw8Aeg4Eiceiy6ku9Eghipha6an + ManagementToken: IeR3ahch3aehu1ahbiVoogio4jaeshashae5ienil2le2eequa6Ootho9yee2xua API: RailsSessionSecretToken: changeme Workbench: diff --git a/charts/arvados/templates/api-server-configmap.yaml b/charts/arvados/templates/api-server-configmap.yaml index 2cea6dc..3de9974 100644 --- a/charts/arvados/templates/api-server-configmap.yaml +++ b/charts/arvados/templates/api-server-configmap.yaml @@ -29,6 +29,10 @@ data: upstream controller { server 127.0.0.1:9004; } + upstream rails { + server 127.0.0.1:8000; + } + proxy_http_version 1.1; @@ -54,6 +58,17 @@ data: # Redirect plain HTTP requests to HTTPS. error_page 497 301 =307 https://$host:$server_port$request_uri; + location /rails/_health/ping { + proxy_pass http://rails/_health/ping; + proxy_connect_timeout 90s; + proxy_read_timeout 300s; + proxy_redirect off; + proxy_set_header X-Forwarded-Proto https; + proxy_set_header Host $http_host; + proxy_set_header X-External-Client $external_client; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + } location / { proxy_pass http://controller; proxy_connect_timeout 90s; diff --git a/tests/GKE.sh b/tests/GKE.sh new file mode 100755 index 0000000..e0b7d2b --- /dev/null +++ b/tests/GKE.sh @@ -0,0 +1,134 @@ +#!/bin/bash + +set -e + +DEBUG=$1 + +if [[ "$DEBUG" == "--debug" ]]; then + set -x +fi + +testReady() { + set +e + ready=0 + apiReady=0 + keepProxyReady=0 + curl --connect-timeout 1 -k -s -H "Authorization: Bearer $MANAGEMENTTOKEN" https://$GKE_IP:444/rails/_health/ping |grep -q OK + if [[ $? -eq 0 ]]; then + apiReady=1 + else + return + fi + curl --connect-timeout 1 -k -s -H "Authorization: Bearer $MANAGEMENTTOKEN" https://$GKE_IP:25107/_health/ping |grep -q OK + if [[ $? -eq 0 ]]; then + keepProxyReady=1 + fi + if [[ $apiReady -eq 1 ]] && [[ $keepProxyReady -eq 1 ]]; then + ready=1 + fi + set -e +} + +stopCluster() { + echo "Stopping Arvados cluster..." + cd $MY_PATH/../charts/arvados + helm delete arvados + + echo "Stopping k8s cluster on GKE" + gcloud container clusters delete arvados --zone us-central1-a --quiet + gcloud compute addresses delete arvados-k8s-ip --region us-central1 --quiet +} + +kubectlStatus() { + echo "Current k8s status:" + echo "services:" + kubectl get svc + echo "pods:" + kubectl get pods + echo +} + +startCluster() { + echo "Starting k8s cluster on GKE" + if [[ -z "$GKE_IP" ]]; then + gcloud compute addresses create arvados-k8s-ip --region us-central1 + GKE_IP=`gcloud compute addresses describe arvados-k8s-ip --region us-central1 --format="value(address)"` + fi + set +e + CLUSTER=`gcloud container clusters describe arvados --zone us-central1-a 2>/dev/null` + set -e + if [[ -z "$CLUSTER" ]]; then + gcloud container clusters create arvados --zone us-central1-a --machine-type n1-standard-2 --cluster-version 1.15 + fi + + set +e + helm get all arvados >/dev/null 2>&1 + if [[ $? -eq 0 ]]; then + echo "Deleting running arvados helm chart..." + helm delete arvados + while [ "$SVC" != "2" ]; do + SVC=`kubectl get svc|wc -l` + echo "Waiting for services to disappear..." + kubectl get svc + sleep 2 + done + fi + set -e + + echo "Starting Arvados cluster..." + cd $MY_PATH/../charts/arvados + ./cert-gen.sh "$GKE_IP" + + helm install arvados . --set externalIP="$GKE_IP" + + echo "Waiting for cluster health OK..." + while [ $ready -ne 1 ]; do + testReady + kubectlStatus + sleep 10 + done +} + +main() { + MY_PATH=`pwd` + MANAGEMENTTOKEN=`cat $MY_PATH/../charts/arvados/config/config.yml |grep Management |cut -f2 -d ':' |sed -e 's/ //'` + set +e + GKE_IP=`gcloud compute addresses describe arvados-k8s-ip --region us-central1 --format="value(address)" 2>/dev/null` + set -e + date + # testReady needs $GKE_IP + testReady + + if [[ $ready -ne 1 ]]; then + startCluster + else + # create the necessary kubectl context for the running cluster + gcloud container clusters get-credentials arvados --zone us-central1-a + kubectlStatus + fi + date + echo "cluster health OK" + + export ARVADOS_API_HOST=$GKE_IP:444 + export ARVADOS_API_HOST_INSECURE=true + export ARVADOS_API_TOKEN=`grep superUserSecret $MY_PATH/../charts/arvados/values.yaml |cut -f2 -d\"` + + cd $MY_PATH/cwl-diagnostics-hasher/ + + echo "uploading requirements for CWL hasher" + arv-put 4xphq-8i9sb-fmwod1qn74cemdp.log.txt --no-resume + echo "uploading Arvados jobs image for CWL hasher" + # just in case, clear the arv-put cache first, arv-keepdocker doesn't pass through --no-resume + rm -rf ~/.cache/arvados/arv-put + echo "running CWL hasher" + cwl-runner hasher-workflow.cwl hasher-workflow-job.yml + if [[ $? -eq 0 ]]; then + echo "Success!" + else + echo "Test failed!" + fi + + stopCluster +} + +main diff --git a/tests/cwl-diagnostics-hasher/4xphq-8i9sb-fmwod1qn74cemdp.log.txt b/tests/cwl-diagnostics-hasher/4xphq-8i9sb-fmwod1qn74cemdp.log.txt new file mode 100644 index 0000000..59869ee --- /dev/null +++ b/tests/cwl-diagnostics-hasher/4xphq-8i9sb-fmwod1qn74cemdp.log.txt @@ -0,0 +1,1821 @@ +2014-07-07_01:46:15 4xphq-8i9sb-fmwod1qn74cemdp 22663 check slurm allocation +2014-07-07_01:46:15 4xphq-8i9sb-fmwod1qn74cemdp 22663 node compute1 - 8 slots +2014-07-07_01:46:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 start +2014-07-07_01:46:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 Install revision 280e17d8c95b5488e6cfabb7304c8b95e1102dfb +2014-07-07_01:46:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 Clean-work-dir exited 256 +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 Install exited 0 +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 script run-command +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 script_version 280e17d8c95b5488e6cfabb7304c8b95e1102dfb +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 script_parameters {"R1":"7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_1.fastq.gz","reference_name":"human_g1k_v37.fasta","stdout":"A.$(reference_name).sam","R2":"7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_2.fastq.gz","reference_collection":"e26a8b984b361b8eb9de17733e254c20+5819","command":["bwa","mem","-t","4","-R","@RG\\tID:group_id\\tPL:illumina\\tSM:sample_id","$(dir $(reference_collection))/$(reference_name)","$(file $(R1))","$(file $(R2))"]} +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 runtime_constraints {"max_tasks_per_node":0,"docker_image":"arvados/jobs-java-bwa-samtools"} +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 start level 0 +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 status: 0 done, 0 running, 1 todo +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 job_task 4xphq-ot0gb-wceyk3zh69gun94 +2014-07-07_01:46:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 child 22819 started on compute1.1 +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 status: 0 done, 1 running, 0 todo +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: Running [/usr/bin/docker.io run --rm=true --attach=stdout --attach=stderr --user=crunch --cidfile=/tmp/crunch-job/work/0.22819/docker.cid --dns 10.20.120.13 --dns 172.17.42.1 --volume=/tmp/crunch-job/src:/tmp/crunch-src:ro --volume=/tmp/crunch-job/work/0.22819.keep:/keep:ro --env=HOME=/home/crunch --env=JOB_PARAMETER_R2=7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_2.fastq.gz --env=JOB_PARAMETER_REFERENCE_NAME=human_g1k_v37.fasta --env=TASK_SEQUENCE=0 --env=TASK_KEEPMOUNT=/keep --env=JOB_PARAMETER_COMMAND=ARRAY(0x25cb7e0) --env=TASK_QSEQUENCE=0 --env=ARVADOS_API_TOKEN=cp6arv3gks091b57nxmhijfltios7i08uc2tjfciwc5pkuoos --env=JOB_PARAMETER_STDOUT=A.$(reference_name).sam --env=TASK_TMPDIR=/tmp/crunch-job/work/0.22819 --env=JOB_PARAMETER_R1=7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_1.fastq.gz --env=JOB_UUID=4xphq-8i9sb-fmwod1qn74cemdp --env=TASK_SLOT_NUMBER=1 --env=TASK_SLOT_NODE=compute1 --env=JOB_SCRIPT=run-command --env=JOB_PARAMETER_REFERENCE_COLLECTION=e26a8b984b361b8eb9de17733e254c20+5819 --env=TASK_WORK=/tmp/crunch-job --env=ARVADOS_API_HOST=4xphq.arvadosapi.com --env=JOB_WORK=/tmp/crunch-job/work --env=TASK_UUID=4xphq-ot0gb-wceyk3zh69gun94 03a51e1c12f1076a086bb700d8d741ba8e63451eab374cb37e76c2f2c57c1e52 stdbuf --output=0 --error=0 /tmp/crunch-src/crunch_scripts/run-command] +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: reading stats from /sys/fs/cgroup/cpuacct/cpuacct.stat +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: reading stats from /sys/fs/cgroup/blkio/blkio.io_service_bytes +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: reading stats from /sys/fs/cgroup/cpuset/cpuset.cpus +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: reading stats from /sys/fs/cgroup/memory/memory.stat +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuset.cpus 8 +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 35102720 +2014-07-07_01:46:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr run-command: bwa mem -t 4 -R @RG\tID:group_id\tPL:illumina\tSM:sample_id /keep/e26a8b984b361b8eb9de17733e254c20+5819/human_g1k_v37.fasta /keep/7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_1.fastq.gz /keep/7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_2.fastq.gz > A.human_g1k_v37.fasta.sam +2014-07-07_01:46:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:46:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:46:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 3338240 +2014-07-07_01:46:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 385691648 +2014-07-07_01:46:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:46:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:46:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 824832 +2014-07-07_01:46:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20992 +2014-07-07_01:46:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 654168064 +2014-07-07_01:46:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:46:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:46:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 36864 +2014-07-07_01:46:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 855519232 +2014-07-07_01:47:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:47:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:47:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 7696384 +2014-07-07_01:47:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_01:47:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 1079578624 +2014-07-07_01:47:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:47:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:47:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 38912 +2014-07-07_01:47:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 66048 +2014-07-07_01:47:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 1325334528 +2014-07-07_01:47:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:47:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:47:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 1526689792 +2014-07-07_01:47:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:47:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:47:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_01:47:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 1728049152 +2014-07-07_01:47:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:47:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:47:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 444416 +2014-07-07_01:47:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 41472 +2014-07-07_01:47:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 1996189696 +2014-07-07_01:47:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:47:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:47:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 2197864448 +2014-07-07_01:48:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:48:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:48:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_01:48:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 2399211520 +2014-07-07_01:48:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:48:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:48:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_01:48:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 2626613248 +2014-07-07_01:48:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:48:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:48:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_01:48:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 2869022720 +2014-07-07_01:48:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:48:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:48:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_01:48:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 3070373888 +2014-07-07_01:48:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:48:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:48:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_01:48:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 3271725056 +2014-07-07_01:48:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:48:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:48:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 3435712512 +2014-07-07_01:49:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:49:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:49:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_01:49:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 3637063680 +2014-07-07_01:49:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:49:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:49:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_01:49:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 3838394368 +2014-07-07_01:49:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:49:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:49:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 4081930240 +2014-07-07_01:49:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:49:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:49:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_01:49:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 4308160512 +2014-07-07_01:49:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:49:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:49:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20992 +2014-07-07_01:49:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 4509491200 +2014-07-07_01:49:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:49:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:49:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 4740562944 +2014-07-07_01:50:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:50:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:50:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_01:50:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 4964081664 +2014-07-07_01:50:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:50:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:50:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_01:50:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 5083508736 +2014-07-07_01:50:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:50:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:50:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_01:50:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 5315518464 +2014-07-07_01:50:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 1 +2014-07-07_01:50:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:50:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_01:50:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 32768 +2014-07-07_01:50:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 5628948480 +2014-07-07_01:50:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_01:50:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:50:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 110592 +2014-07-07_01:50:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 123904 +2014-07-07_01:50:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 5749219328 +2014-07-07_01:50:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:50:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:50:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:50:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6040121344 +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 123021, 0, 0) +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 182, 217) +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.48, 44.74) +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:50:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:50:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 69.700 CPU sec, 17.088 real sec +2014-07-07_01:51:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 44 +2014-07-07_01:51:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:51:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_01:51:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6140588032 +2014-07-07_01:51:04 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:51:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 29 +2014-07-07_01:51:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:51:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 134980096 +2014-07-07_01:51:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 58880 +2014-07-07_01:51:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6009503744 +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 184996, 1, 0) +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.81, 44.93) +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:51:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:51:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 39.668 CPU sec, 9.790 real sec +2014-07-07_01:51:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:51:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:51:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:51:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_01:51:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6019833856 +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 172107, 0, 0) +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.82, 44.26) +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:51:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:51:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 48.144 CPU sec, 12.052 real sec +2014-07-07_01:51:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 41 +2014-07-07_01:51:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:51:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 5997568000 +2014-07-07_01:51:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:51:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 47 +2014-07-07_01:51:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:51:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 37376 +2014-07-07_01:51:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6340431872 +2014-07-07_01:51:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_01:51:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_01:51:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 267583488 +2014-07-07_01:51:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6695329792 +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 42531, 3, 0) +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 218) +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.15, 45.45) +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:51:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:52:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_01:52:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:52:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6815944704 +2014-07-07_01:52:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_01:52:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:52:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_01:52:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6818570240 +2014-07-07_01:52:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 191.676 CPU sec, 47.946 real sec +2014-07-07_01:52:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 41 +2014-07-07_01:52:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:52:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6074253312 +2014-07-07_01:52:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:52:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 47 +2014-07-07_01:52:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:52:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_01:52:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6376267776 +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 112044, 1, 2) +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 184, 218) +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.48, 44.96) +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:52:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:52:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_01:52:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:52:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8704 +2014-07-07_01:52:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6407696384 +2014-07-07_01:52:44 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 95.220 CPU sec, 23.831 real sec +2014-07-07_01:52:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:52:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 24 +2014-07-07_01:52:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:52:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 259354624 +2014-07-07_01:52:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6077698048 +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 184582, 0, 1) +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.69, 44.74) +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:52:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:52:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 38.404 CPU sec, 9.617 real sec +2014-07-07_01:53:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 46 +2014-07-07_01:53:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:53:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 12005376 +2014-07-07_01:53:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6172229632 +2014-07-07_01:53:04 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:53:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 28 +2014-07-07_01:53:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:53:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_01:53:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_01:53:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6112628736 +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 174405, 0, 0) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FF... +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (74, 108, 151) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 305) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (104.46, 40.50) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 382) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.79, 44.78) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:53:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF +2014-07-07_01:53:15 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 42.048 CPU sec, 10.526 real sec +2014-07-07_01:53:17 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:53:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:53:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:53:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_01:53:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6101204992 +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 184791, 0, 0) +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.45, 44.64) +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:53:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:53:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 37.040 CPU sec, 9.274 real sec +2014-07-07_01:53:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:53:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:53:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:53:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 346185728 +2014-07-07_01:53:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6085435392 +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 127003, 1, 1) +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.40, 44.72) +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:53:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:53:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_01:53:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:53:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 55746560 +2014-07-07_01:53:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6209880064 +2014-07-07_01:53:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 51.404 CPU sec, 12.864 real sec +2014-07-07_01:53:43 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:53:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:53:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:53:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6151770112 +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 105955, 0, 1) +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.99, 44.44) +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:53:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:53:57 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 53.508 CPU sec, 13.391 real sec +2014-07-07_01:54:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 34 +2014-07-07_01:54:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:54:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_01:54:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6074408960 +2014-07-07_01:54:02 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:54:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 39 +2014-07-07_01:54:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:54:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_01:54:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6130438144 +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 182020, 0, 3) +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.51, 44.65) +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:54:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:54:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 38.620 CPU sec, 9.670 real sec +2014-07-07_01:54:17 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:54:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_01:54:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 4 +2014-07-07_01:54:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 408121344 +2014-07-07_01:54:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6101045248 +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 189931, 0, 0) +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.47, 44.51) +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:54:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:54:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 40.596 CPU sec, 10.164 real sec +2014-07-07_01:54:29 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:54:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:54:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:54:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6079451136 +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 183816, 0, 2) +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.65, 44.80) +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:54:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:54:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 41.436 CPU sec, 10.374 real sec +2014-07-07_01:54:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 47 +2014-07-07_01:54:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:54:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_01:54:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 46080 +2014-07-07_01:54:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6178770944 +2014-07-07_01:54:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:54:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 42 +2014-07-07_01:54:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:54:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6125191168 +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 185783, 0, 1) +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.74, 44.70) +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:54:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:54:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 43.072 CPU sec, 10.793 real sec +2014-07-07_01:54:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:55:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:55:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:55:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 249970688 +2014-07-07_01:55:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6113107968 +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 180915, 0, 2) +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.52, 44.59) +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:55:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:55:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 40.712 CPU sec, 10.193 real sec +2014-07-07_01:55:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:55:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_01:55:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_01:55:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 150610432 +2014-07-07_01:55:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_01:55:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6075805696 +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 50 +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 36864 +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6141161472 +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 175815, 11, 1) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.32, 44.56) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RF... +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (858, 3677, 4864) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 12876) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (2778.55, 2099.58) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 16882) +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:55:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF +2014-07-07_01:55:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 45.668 CPU sec, 11.433 real sec +2014-07-07_01:55:23 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:55:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:55:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:55:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6168260608 +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 150255, 0, 0) +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.89, 44.65) +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:55:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:55:37 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 55.724 CPU sec, 13.946 real sec +2014-07-07_01:55:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 37 +2014-07-07_01:55:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_01:55:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 160579584 +2014-07-07_01:55:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 82432 +2014-07-07_01:55:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6075191296 +2014-07-07_01:55:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:55:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 38 +2014-07-07_01:55:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:55:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 241414144 +2014-07-07_01:55:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6135595008 +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 171763, 1, 0) +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 183, 217) +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.47, 44.80) +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:55:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:55:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 45.448 CPU sec, 11.380 real sec +2014-07-07_01:55:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:56:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:56:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:56:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_01:56:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_01:56:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6103363584 +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 173723, 2, 0) +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.88, 44.55) +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:56:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:56:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 45.600 CPU sec, 11.424 real sec +2014-07-07_01:56:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:56:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:56:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:56:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 20992 +2014-07-07_01:56:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 50688 +2014-07-07_01:56:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6078373888 +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 151899, 0, 0) +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 217) +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.34, 44.67) +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 109068288 +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_01:56:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6194520064 +2014-07-07_01:56:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 49.464 CPU sec, 12.380 real sec +2014-07-07_01:56:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:56:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_01:56:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:56:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 293384192 +2014-07-07_01:56:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6101536768 +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (9, 174648, 0, 4) +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.11, 44.60) +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:56:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:56:37 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 41.696 CPU sec, 10.440 real sec +2014-07-07_01:56:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:56:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:56:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:56:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_01:56:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_01:56:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6078738432 +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 176426, 0, 1) +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 183, 217) +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.51, 44.86) +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:56:49 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:56:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_01:56:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:56:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6167080960 +2014-07-07_01:56:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 42.892 CPU sec, 10.737 real sec +2014-07-07_01:56:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:57:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_01:57:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_01:57:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 123486208 +2014-07-07_01:57:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 58368 +2014-07-07_01:57:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6099509248 +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 172874, 0, 0) +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 218) +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.20, 45.06) +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:57:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:57:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 48.412 CPU sec, 12.118 real sec +2014-07-07_01:57:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:57:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:57:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_01:57:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 144859136 +2014-07-07_01:57:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6075822080 +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 183551, 0, 0) +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.91, 44.45) +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:57:19 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:57:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 40.536 CPU sec, 10.149 real sec +2014-07-07_01:57:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_01:57:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:57:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6186463232 +2014-07-07_01:57:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:57:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 41 +2014-07-07_01:57:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:57:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6125727744 +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 168784, 7, 1) +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.65, 44.74) +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:57:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:57:33 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 44.024 CPU sec, 11.021 real sec +2014-07-07_01:57:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:57:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:57:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:57:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 218137088 +2014-07-07_01:57:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_01:57:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6114156544 +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 162686, 0, 0) +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.03, 44.57) +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:57:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:57:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 45.580 CPU sec, 11.411 real sec +2014-07-07_01:57:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 32 +2014-07-07_01:57:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_01:57:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 183353344 +2014-07-07_01:57:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6074191872 +2014-07-07_01:57:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:58:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 42 +2014-07-07_01:58:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:58:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6149562368 +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 121970, 0, 1) +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.01, 44.56) +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:58:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:58:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 56.632 CPU sec, 14.171 real sec +2014-07-07_01:58:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 30 +2014-07-07_01:58:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:58:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_01:58:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6074191872 +2014-07-07_01:58:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:58:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 45 +2014-07-07_01:58:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:58:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_01:58:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6134415360 +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 148923, 3, 0) +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.38, 44.70) +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:58:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:58:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 46.800 CPU sec, 11.721 real sec +2014-07-07_01:58:25 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:58:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 39 +2014-07-07_01:58:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:58:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 269361152 +2014-07-07_01:58:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_01:58:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6109687808 +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 132753, 0, 1) +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.40, 44.67) +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:58:36 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:58:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 58.380 CPU sec, 14.610 real sec +2014-07-07_01:58:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 46 +2014-07-07_01:58:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:58:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6201667584 +2014-07-07_01:58:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:58:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 42 +2014-07-07_01:58:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:58:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6136864768 +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 178576, 0, 0) +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.96, 44.41) +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:58:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:58:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 48.508 CPU sec, 12.142 real sec +2014-07-07_01:58:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:59:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:59:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 4 +2014-07-07_01:59:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 404377600 +2014-07-07_01:59:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6101880832 +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 178675, 0, 3) +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 217) +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.18, 44.70) +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:59:05 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:59:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 42.416 CPU sec, 10.619 real sec +2014-07-07_01:59:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 32 +2014-07-07_01:59:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:59:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_01:59:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6074208256 +2014-07-07_01:59:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:59:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 42 +2014-07-07_01:59:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:59:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6176800768 +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 94191, 0, 1) +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.62, 44.83) +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:59:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:59:24 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 50.404 CPU sec, 12.613 real sec +2014-07-07_01:59:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:59:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:59:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_01:59:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 4096 +2014-07-07_01:59:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_01:59:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6103695360 +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 170391, 0, 2) +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.70, 44.82) +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:59:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:59:37 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 41.640 CPU sec, 10.426 real sec +2014-07-07_01:59:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 34 +2014-07-07_01:59:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_01:59:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 4096 +2014-07-07_01:59:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 271073280 +2014-07-07_01:59:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 25088 +2014-07-07_01:59:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6073856000 +2014-07-07_01:59:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_01:59:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_01:59:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_01:59:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6132613120 +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 175029, 4, 0) +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 217) +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.32, 44.75) +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_01:59:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_01:59:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 44.884 CPU sec, 11.235 real sec +2014-07-07_01:59:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:00:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:00:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:00:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6111916032 +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 117292, 0, 0) +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 216) +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.01, 44.59) +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:00:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:00:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 57.752 CPU sec, 14.454 real sec +2014-07-07_02:00:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_02:00:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:00:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 218132992 +2014-07-07_02:00:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:00:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6193356800 +2014-07-07_02:00:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 41 +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 159744 +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 140554240 +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 1617920 +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:00:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6148603904 +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 175178, 0, 1) +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.76, 44.91) +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:00:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:00:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 42.900 CPU sec, 10.741 real sec +2014-07-07_02:00:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 53248 +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 2777088 +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 219648 +2014-07-07_02:00:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6087389184 +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 169934, 48, 1) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.85, 44.77) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RF... +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (871, 926, 964) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (685, 1150) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (928.60, 57.93) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (592, 1243) +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:00:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF +2014-07-07_02:00:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 45.952 CPU sec, 11.504 real sec +2014-07-07_02:00:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 46 +2014-07-07_02:00:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:00:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 8192 +2014-07-07_02:00:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 21504 +2014-07-07_02:00:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6172946432 +2014-07-07_02:00:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 161292, 0, 0) +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.92, 44.71) +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 43 +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 81920 +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 315060224 +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:00:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6138089472 +2014-07-07_02:00:51 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 38.536 CPU sec, 9.654 real sec +2014-07-07_02:00:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:01:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:01:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:01:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 790528 +2014-07-07_02:01:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_02:01:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_02:01:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6096347136 +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 163204, 0, 6) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FF... +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (757, 784, 885) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (501, 1141) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (841.62, 84.94) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (373, 1269) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.67, 44.75) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:01:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF +2014-07-07_02:01:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 44.492 CPU sec, 11.140 real sec +2014-07-07_02:01:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:01:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:01:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:01:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 561152 +2014-07-07_02:01:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6075043840 +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 168987, 0, 1) +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 218) +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.23, 45.05) +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:01:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:01:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 40.904 CPU sec, 10.242 real sec +2014-07-07_02:01:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_02:01:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:01:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 90112 +2014-07-07_02:01:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 109068288 +2014-07-07_02:01:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6185721856 +2014-07-07_02:01:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 978944 +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 268312576 +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6128840704 +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (6, 173405, 0, 0) +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.51, 44.70) +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:01:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:01:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 38.964 CPU sec, 9.757 real sec +2014-07-07_02:01:37 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:01:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:01:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:01:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1130496 +2014-07-07_02:01:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:01:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 50176 +2014-07-07_02:01:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6091640832 +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 184897, 0, 0) +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 183, 216) +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (33, 338) +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.21, 44.54) +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 399) +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:01:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:01:47 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 42.572 CPU sec, 10.659 real sec +2014-07-07_02:01:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:01:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:01:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:01:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1028096 +2014-07-07_02:01:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6071373824 +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 176555, 1, 0) +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.66, 44.66) +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:01:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:02:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:02:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:02:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 295124992 +2014-07-07_02:02:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6158835712 +2014-07-07_02:02:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 43.460 CPU sec, 10.880 real sec +2014-07-07_02:02:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:02:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:02:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:02:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 970752 +2014-07-07_02:02:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 37376 +2014-07-07_02:02:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6091894784 +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 171098, 2, 0) +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 215) +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (35, 335) +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (187.29, 44.07) +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 395) +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:02:16 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:02:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 47.960 CPU sec, 12.013 real sec +2014-07-07_02:02:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:02:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:02:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:02:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 774144 +2014-07-07_02:02:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6068326400 +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 162756, 0, 2) +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 183, 217) +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.39, 44.78) +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:02:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:02:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 39.460 CPU sec, 9.881 real sec +2014-07-07_02:02:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_02:02:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:02:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 86016 +2014-07-07_02:02:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 78651392 +2014-07-07_02:02:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6159204352 +2014-07-07_02:02:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:02:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:02:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:02:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 962560 +2014-07-07_02:02:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 190362112 +2014-07-07_02:02:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:02:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6125305856 +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 173103, 0, 2) +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.51, 44.66) +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:02:41 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:02:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 42.220 CPU sec, 10.570 real sec +2014-07-07_02:02:47 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:02:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:02:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:02:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1245184 +2014-07-07_02:02:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6089400320 +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 114193, 1, 0) +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 184, 218) +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.54, 45.21) +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:02:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:03:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:03:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:03:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 24772608 +2014-07-07_02:03:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6175588352 +2014-07-07_02:03:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 51.072 CPU sec, 12.785 real sec +2014-07-07_02:03:03 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:03:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 39 +2014-07-07_02:03:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_02:03:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1335296 +2014-07-07_02:03:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 244572160 +2014-07-07_02:03:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_02:03:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6116032512 +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 173129, 1, 0) +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.46, 44.61) +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:03:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:03:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 39.180 CPU sec, 9.809 real sec +2014-07-07_02:03:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:03:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:03:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:03:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1507328 +2014-07-07_02:03:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:03:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6102986752 +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 140243, 0, 0) +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 182, 217) +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.45, 44.83) +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:03:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:03:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 60.516 CPU sec, 15.144 real sec +2014-07-07_02:03:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_02:03:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:03:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 212992 +2014-07-07_02:03:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6183841792 +2014-07-07_02:03:38 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:03:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 9 +2014-07-07_02:03:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_02:03:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 12288 +2014-07-07_02:03:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1228800 +2014-07-07_02:03:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 405557248 +2014-07-07_02:03:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6086217728 +2014-07-07_02:03:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:03:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:03:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6228639744 +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 88619, 0, 0) +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.74, 44.63) +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:03:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:03:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 81.952 CPU sec, 20.507 real sec +2014-07-07_02:04:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 44 +2014-07-07_02:04:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:04:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 909312 +2014-07-07_02:04:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6292078592 +2014-07-07_02:04:01 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:04:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 45 +2014-07-07_02:04:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:04:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 282624 +2014-07-07_02:04:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 136122368 +2014-07-07_02:04:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 25088 +2014-07-07_02:04:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6115672064 +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 145949, 0, 0) +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.57, 44.83) +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:04:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:04:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 48.960 CPU sec, 12.254 real sec +2014-07-07_02:04:18 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:04:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:04:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:04:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 20480 +2014-07-07_02:04:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1015808 +2014-07-07_02:04:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:04:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6073188352 +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 166195, 0, 1) +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.80, 44.79) +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:04:27 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:04:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 39.100 CPU sec, 9.789 real sec +2014-07-07_02:04:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 41 +2014-07-07_02:04:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:04:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1052672 +2014-07-07_02:04:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6058971136 +2014-07-07_02:04:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 48 +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 54534144 +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 41984 +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6124179456 +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 135304, 0, 0) +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 218) +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.06, 45.09) +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:04:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:04:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 47.892 CPU sec, 11.987 real sec +2014-07-07_02:04:44 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:04:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:04:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_02:04:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1433600 +2014-07-07_02:04:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 215248896 +2014-07-07_02:04:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:04:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6112010240 +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 153535, 0, 0) +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.45, 44.68) +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:04:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:04:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 39.100 CPU sec, 9.790 real sec +2014-07-07_02:04:59 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:05:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:05:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:05:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 8192 +2014-07-07_02:05:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1806336 +2014-07-07_02:05:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6060269568 +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 172496, 1, 1) +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 182, 217) +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.46, 44.77) +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:05:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:05:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:05:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:05:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_02:05:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6151573504 +2014-07-07_02:05:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 45.876 CPU sec, 11.483 real sec +2014-07-07_02:05:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 4 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 237568 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1249280 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 405151744 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 274432 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:05:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6121844736 +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 174373, 37, 0) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.62, 44.78) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RF... +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (158, 179, 191) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (92, 257) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (176.63, 26.45) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (59, 290) +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:05:21 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF +2014-07-07_02:05:23 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 39.184 CPU sec, 9.810 real sec +2014-07-07_02:05:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 25 +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 12288 +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1806336 +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 37376 +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 190464 +2014-07-07_02:05:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6065938432 +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (1, 166479, 0, 0) +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 218) +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.05, 45.06) +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:05:39 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:05:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:05:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:05:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6145908736 +2014-07-07_02:05:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 49.428 CPU sec, 12.373 real sec +2014-07-07_02:05:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:05:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:05:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:05:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1314816 +2014-07-07_02:05:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_02:05:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6099578880 +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 153152, 0, 0) +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 218) +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (32, 342) +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (189.49, 45.34) +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 404) +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:05:52 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:05:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 46.600 CPU sec, 11.664 real sec +2014-07-07_02:05:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 4 +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1683456 +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 403161088 +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:06:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6080946176 +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (5, 169287, 0, 1) +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.76, 44.69) +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:06:06 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:06:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 44.924 CPU sec, 11.246 real sec +2014-07-07_02:06:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 37 +2014-07-07_02:06:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:06:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:06:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1138688 +2014-07-07_02:06:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 33280 +2014-07-07_02:06:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6049116160 +2014-07-07_02:06:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:06:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 37 +2014-07-07_02:06:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:06:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:06:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6110494720 +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 166804, 0, 1) +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (155, 182, 217) +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (31, 341) +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.34, 44.87) +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 403) +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:06:22 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:06:24 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 44.788 CPU sec, 11.212 real sec +2014-07-07_02:06:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:06:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:06:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:06:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 942080 +2014-07-07_02:06:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 12288 +2014-07-07_02:06:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6089768960 +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (3, 139513, 3, 1) +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.86, 44.85) +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:06:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:06:37 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 43.636 CPU sec, 10.922 real sec +2014-07-07_02:06:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 34 +2014-07-07_02:06:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_02:06:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1138688 +2014-07-07_02:06:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 268906496 +2014-07-07_02:06:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:06:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6047076352 +2014-07-07_02:06:42 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:06:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:06:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:06:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:06:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:06:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6114537472 +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 155622, 0, 2) +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.49, 44.69) +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:06:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:06:54 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 50.552 CPU sec, 12.655 real sec +2014-07-07_02:06:57 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:07:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:07:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:07:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 937984 +2014-07-07_02:07:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6071574528 +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (4, 152888, 0, 0) +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (156, 183, 217) +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (34, 339) +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (188.68, 44.79) +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 400) +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF as there are not enough pairs +2014-07-07_02:07:07 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:07:09 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 50.540 CPU sec, 12.653 real sec +2014-07-07_02:07:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 46 +2014-07-07_02:07:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:07:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 466944 +2014-07-07_02:07:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 163594240 +2014-07-07_02:07:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_02:07:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6175580160 +2014-07-07_02:07:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:07:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 42 +2014-07-07_02:07:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:07:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 778240 +2014-07-07_02:07:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 169660416 +2014-07-07_02:07:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6133288960 +2014-07-07_02:07:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:07:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:07:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6237106176 +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 28135, 45, 4) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF as there are not enough pairs +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (151, 179, 216) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (21, 346) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (184.15, 49.49) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 411) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RF... +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (118, 335, 723) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1933) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (343.50, 330.75) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 2538) +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR as there are not enough pairs +2014-07-07_02:07:32 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF +2014-07-07_02:07:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:07:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:07:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:07:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6277505024 +2014-07-07_02:07:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 114.724 CPU sec, 28.695 real sec +2014-07-07_02:07:45 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 400000 sequences (40000000 bp)... +2014-07-07_02:07:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 24 +2014-07-07_02:07:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 2 +2014-07-07_02:07:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 8192 +2014-07-07_02:07:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 929792 +2014-07-07_02:07:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 71393280 +2014-07-07_02:07:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6085046272 +2014-07-07_02:08:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:08:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:08:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:08:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6193020928 +2014-07-07_02:08:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:08:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:08:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:08:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6300250112 +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 19140, 77, 11) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FF... +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (57, 226, 1687) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4947) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (731.75, 808.32) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 6577) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (141, 178, 218) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 372) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (178.47, 60.39) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 449) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RF... +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (77, 232, 345) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 881) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (210.49, 177.64) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 1149) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RR... +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (94, 720, 3008) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 8836) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (1508.18, 1572.85) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 11750) +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF +2014-07-07_02:08:14 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR +2014-07-07_02:08:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:08:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:08:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 134656000 +2014-07-07_02:08:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:08:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6346989568 +2014-07-07_02:08:26 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 400000 reads in 162.744 CPU sec, 40.702 real sec +2014-07-07_02:08:28 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::main_mem] read 221474 sequences (22147400 bp)... +2014-07-07_02:08:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 40 +2014-07-07_02:08:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:08:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 90112 +2014-07-07_02:08:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 write 1028096 +2014-07-07_02:08:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6059425792 +2014-07-07_02:08:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:08:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:08:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16896 +2014-07-07_02:08:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6166450176 +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 13941, 30, 10) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FF... +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (82, 141, 2286) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6694) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (1180.80, 1543.55) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 8898) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation FR... +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (147, 180, 221) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 369) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (183.15, 57.58) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 443) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RF... +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (112, 301, 498) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1270) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (314.29, 250.35) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 1656) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] analyzing insert size distribution for orientation RR... +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] (25, 50, 75) percentile: (87, 2325, 2982) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 8772) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] mean and std.dev: (1796.20, 1392.30) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] low and high boundaries for proper pairs: (1, 11667) +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation FF +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RF +2014-07-07_02:08:46 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_pestat] skip orientation RR +2014-07-07_02:08:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 49 +2014-07-07_02:08:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:08:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 127696896 +2014-07-07_02:08:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 94208 +2014-07-07_02:08:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 6231764992 +2014-07-07_02:08:53 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [M::mem_process_seqs] Processed 221474 reads in 99.660 CPU sec, 24.926 real sec +2014-07-07_02:08:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [main] Version: 0.7.9a-r786 +2014-07-07_02:08:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [main] CMD: bwa mem -t 4 -R @RG\tID:group_id\tPL:illumina\tSM:sample_id /keep/e26a8b984b361b8eb9de17733e254c20+5819/human_g1k_v37.fasta /keep/7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_1.fastq.gz /keep/7eb6160977c6161fee4f365765d33801+2370/HWI-ST1027_129_D0THKACXX.1_2.fastq.gz +2014-07-07_02:08:55 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr [main] Real time: 1355.162 sec; CPU: 3635.900 sec +2014-07-07_02:08:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr run-command: completed with exit code 0 +2014-07-07_02:08:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr run-command: the follow output files will be saved to keep: +2014-07-07_02:08:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr run-command: 8814759443 ./A.human_g1k_v37.fasta.sam +2014-07-07_02:08:56 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr run-command: start writing output to keep +2014-07-07_02:09:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 15 +2014-07-07_02:09:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 3 +2014-07-07_02:09:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 8736768 +2014-07-07_02:09:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 68616192 +2014-07-07_02:09:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 71180288 +2014-07-07_02:09:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 366465024 +2014-07-07_02:09:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:09:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:09:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 20480 +2014-07-07_02:09:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 67108864 +2014-07-07_02:09:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8704 +2014-07-07_02:09:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433590272 +2014-07-07_02:09:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:09:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:09:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:09:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 134217728 +2014-07-07_02:09:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:09:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 567824384 +2014-07-07_02:09:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:09:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:09:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:09:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 67108864 +2014-07-07_02:09:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_02:09:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433614848 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 77824 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 67108864 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 389120 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:09:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433688576 +2014-07-07_02:09:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:09:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:09:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 134217728 +2014-07-07_02:09:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 567914496 +2014-07-07_02:10:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:10:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:10:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 67108864 +2014-07-07_02:10:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_02:10:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 500801536 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 67108864 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 54272 +2014-07-07_02:10:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433700864 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 16384 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 67108864 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 4071424 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 40960 +2014-07-07_02:10:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:10:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:10:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:10:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 102547456 +2014-07-07_02:10:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:10:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:10:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:10:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 5926912 +2014-07-07_02:10:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 115712 +2014-07-07_02:10:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:10:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:10:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:10:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_02:10:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 568115200 +2014-07-07_02:11:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:11:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:11:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 40960 +2014-07-07_02:11:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433893376 +2014-07-07_02:11:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:11:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:11:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 20992 +2014-07-07_02:11:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 46080 +2014-07-07_02:11:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433893376 +2014-07-07_02:11:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:11:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:11:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_02:11:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 568119296 +2014-07-07_02:11:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:11:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:11:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433893376 +2014-07-07_02:11:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:11:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:11:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:11:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 50176 +2014-07-07_02:11:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433893376 +2014-07-07_02:11:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:11:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:11:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_02:11:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 501006336 +2014-07-07_02:12:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:12:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:12:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433893376 +2014-07-07_02:12:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:12:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:12:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 16896 +2014-07-07_02:12:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:12:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 419143680 +2014-07-07_02:12:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:12:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:12:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:12:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:12:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:12:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_02:12:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:12:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:12:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:12:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:12:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 29696 +2014-07-07_02:12:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 568123392 +2014-07-07_02:12:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:12:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:12:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:13:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:13:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:13:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:13:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:13:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:13:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:13:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_02:13:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 501010432 +2014-07-07_02:13:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:13:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:13:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:13:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:13:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:13:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 533147648 +2014-07-07_02:13:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:13:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:13:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 24576 +2014-07-07_02:13:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:13:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:13:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:13:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433897472 +2014-07-07_02:14:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:14:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:14:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 501010432 +2014-07-07_02:14:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:14:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:14:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:14:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:14:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:14:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:14:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_02:14:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:14:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:14:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:14:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:14:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:14:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:14:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 54272 +2014-07-07_02:14:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 433889280 +2014-07-07_02:14:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:14:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:14:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 568115200 +2014-07-07_02:15:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:15:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:15:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 151552 +2014-07-07_02:15:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 2359296 +2014-07-07_02:15:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_02:15:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506511360 +2014-07-07_02:15:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:15:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:15:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 61440 +2014-07-07_02:15:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 read 20480 +2014-07-07_02:15:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12800 +2014-07-07_02:15:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439459840 +2014-07-07_02:15:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:15:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:15:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 16384 +2014-07-07_02:15:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 581287936 +2014-07-07_02:15:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:15:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:15:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 73728 +2014-07-07_02:15:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439476224 +2014-07-07_02:15:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:15:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:15:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:15:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:15:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:15:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 111104 +2014-07-07_02:15:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573710336 +2014-07-07_02:16:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:16:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:16:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_02:16:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:16:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:16:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:16:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 20992 +2014-07-07_02:16:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 28672 +2014-07-07_02:16:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:16:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:16:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:16:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 67072 +2014-07-07_02:16:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573710336 +2014-07-07_02:16:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:16:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:16:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:16:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:16:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:16:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:16:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:16:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:16:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:16:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 49664 +2014-07-07_02:16:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573710336 +2014-07-07_02:17:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:17:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:17:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 4096 +2014-07-07_02:17:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:17:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:17:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:17:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:17:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439484416 +2014-07-07_02:17:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:17:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:17:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 4096 +2014-07-07_02:17:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 20480 +2014-07-07_02:17:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506605568 +2014-07-07_02:17:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:17:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:17:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:17:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:17:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:17:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 read 4096 +2014-07-07_02:17:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:17:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:17:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:17:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:17:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573718528 +2014-07-07_02:18:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:18:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:18:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:18:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:18:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:18:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:18:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 20992 +2014-07-07_02:18:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:18:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:18:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:18:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:18:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12800 +2014-07-07_02:18:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573718528 +2014-07-07_02:18:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:18:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:18:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:18:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:18:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:18:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:18:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:18:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:18:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:18:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:18:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:18:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 25088 +2014-07-07_02:18:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573718528 +2014-07-07_02:19:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:19:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:19:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:19:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:19:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:19:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:19:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:19:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:19:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:19:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:19:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:19:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573718528 +2014-07-07_02:19:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:19:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:19:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:19:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:19:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:19:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:19:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:19:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:19:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:19:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:19:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506605568 +2014-07-07_02:20:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:20:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:20:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:20:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:20:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:20:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 4096 +2014-07-07_02:20:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439492608 +2014-07-07_02:20:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:20:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 1 +2014-07-07_02:20:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:32 read 16384 +2014-07-07_02:20:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 49152 +2014-07-07_02:20:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:20:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:20:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:20:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:20:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:20:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:20:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:20:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:20:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:20:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:20:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 4096 +2014-07-07_02:20:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 148480 +2014-07-07_02:20:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:21:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:21:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:21:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:21:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:21:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:21:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:21:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 20992 +2014-07-07_02:21:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:21:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:21:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:21:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:21:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 50688 +2014-07-07_02:21:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:21:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:21:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:21:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:21:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:21:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:21:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:21:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 8192 +2014-07-07_02:21:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 385003520 +2014-07-07_02:21:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:21:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:21:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 58368 +2014-07-07_02:21:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:22:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:22:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:22:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:22:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:22:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:22:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:22:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:22:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 481292288 +2014-07-07_02:22:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:22:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:22:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:22:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:22:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:22:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:22:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:22:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:22:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:22:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573722624 +2014-07-07_02:22:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:22:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:22:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:16 write 512 +2014-07-07_02:22:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 25088 +2014-07-07_02:22:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:23:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:23:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:23:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:23:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:23:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:23:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:23:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573722624 +2014-07-07_02:23:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:23:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:23:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:23:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:23:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:23:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:23:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:23:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:23:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:23:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 8192 +2014-07-07_02:23:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 506609664 +2014-07-07_02:23:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:23:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:23:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:24:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:24:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:24:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:24:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573722624 +2014-07-07_02:24:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:24:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:24:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 16384 +2014-07-07_02:24:10 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:24:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:24:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:24:20 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:24:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:24:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:24:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 12288 +2014-07-07_02:24:30 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 573722624 +2014-07-07_02:24:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:24:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:24:40 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439496704 +2014-07-07_02:24:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:24:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:24:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: blkio.io_service_bytes 202:1 write 67072 +2014-07-07_02:24:50 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439500800 +2014-07-07_02:25:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat user 0 +2014-07-07_02:25:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: cpuacct.stat sys 0 +2014-07-07_02:25:00 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr crunchstat: memory.stat rss 439500800 +2014-07-07_02:25:08 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 stderr run-command: success +2014-07-07_02:25:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 child 22819 on compute1.1 exit 0 signal 0 success=true +2014-07-07_02:25:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 success in 2331 seconds +2014-07-07_02:25:11 4xphq-8i9sb-fmwod1qn74cemdp 22663 0 output b6edfbcb26c51bce74d50d81b51fd1c7+5585 +2014-07-07_02:25:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 wait for last 0 children to finish +2014-07-07_02:25:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 status: 1 done, 0 running, 0 todo +2014-07-07_02:25:12 4xphq-8i9sb-fmwod1qn74cemdp 22663 release job allocation +2014-07-07_02:25:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 Freeze not implemented +2014-07-07_02:25:13 4xphq-8i9sb-fmwod1qn74cemdp 22663 collate +2014-07-07_02:25:35 4xphq-8i9sb-fmwod1qn74cemdp 22663 output b6edfbcb26c51bce74d50d81b51fd1c7+5585 +2014-07-07_02:25:58 4xphq-8i9sb-fmwod1qn74cemdp 22663 finish diff --git a/tests/cwl-diagnostics-hasher/hasher-workflow-job.yml b/tests/cwl-diagnostics-hasher/hasher-workflow-job.yml new file mode 100644 index 0000000..ebd4f56 --- /dev/null +++ b/tests/cwl-diagnostics-hasher/hasher-workflow-job.yml @@ -0,0 +1,6 @@ +inputfile: + class: File + path: keep:49c5e65830378703643f5d8cbe424567+87/4xphq-8i9sb-fmwod1qn74cemdp.log.txt +hasher1_outputname: hasher1.md5sum.txt +hasher2_outputname: hasher2.md5sum.txt +hasher3_outputname: hasher3.md5sum.txt diff --git a/tests/cwl-diagnostics-hasher/hasher-workflow.cwl b/tests/cwl-diagnostics-hasher/hasher-workflow.cwl new file mode 100644 index 0000000..6fd3aa0 --- /dev/null +++ b/tests/cwl-diagnostics-hasher/hasher-workflow.cwl @@ -0,0 +1,55 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.0 +class: Workflow + +$namespaces: + arv: "http://arvados.org/cwl#" + cwltool: "http://commonwl.org/cwltool#" + +inputs: + inputfile: File + hasher1_outputname: string + hasher2_outputname: string + hasher3_outputname: string + +outputs: + hasher_out: + type: File + outputSource: hasher3/hasher_out + +hints: + arv:ReuseRequirement: + enableReuse: false + +steps: + hasher1: + run: hasher.cwl + in: + inputfile: inputfile + outputname: hasher1_outputname + out: [hasher_out] + hints: + arv:IntermediateOutput: + outputTTL: 3600 + + hasher2: + run: hasher.cwl + in: + inputfile: hasher1/hasher_out + outputname: hasher2_outputname + out: [hasher_out] + hints: + arv:IntermediateOutput: + outputTTL: 3600 + + hasher3: + run: hasher.cwl + in: + inputfile: hasher2/hasher_out + outputname: hasher3_outputname + out: [hasher_out] + hints: + arv:IntermediateOutput: + outputTTL: 3600 + diff --git a/tests/cwl-diagnostics-hasher/hasher.cwl b/tests/cwl-diagnostics-hasher/hasher.cwl new file mode 100644 index 0000000..86284d9 --- /dev/null +++ b/tests/cwl-diagnostics-hasher/hasher.cwl @@ -0,0 +1,21 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.0 +class: CommandLineTool + +baseCommand: md5sum +inputs: + inputfile: + type: File + inputBinding: + position: 1 + outputname: + type: string + +stdout: $(inputs.outputname) + +outputs: + hasher_out: + type: File + outputBinding: + glob: $(inputs.outputname)