+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: AGPL-3.0
-
-# Do not use this file for site configuration. Create application.yml
-# instead (see application.yml.example).
-#
-# The order of precedence is:
-# 1. config/environments/{RAILS_ENV}.rb (deprecated)
-# 2. Section in application.yml corresponding to RAILS_ENV (e.g., development)
-# 3. Section in application.yml called "common"
-# 4. Section in application.default.yml corresponding to RAILS_ENV
-# 5. Section in application.default.yml called "common"
-
-common:
- ###
- ### Essential site configuration
- ###
-
- # The prefix used for all database identifiers to identify the record as
- # originating from this site. Must be exactly 5 alphanumeric characters
- # (lowercase ASCII letters and digits).
- uuid_prefix: {{ .Values.uuidPrefix }}
-
- # secret_token is a string of alphanumeric characters used by Rails
- # to sign session tokens. IMPORTANT: This is a site secret. It
- # should be at least 50 characters.
- secret_token: changeme
-
- # blob_signing_key is a string of alphanumeric characters used to
- # generate permission signatures for Keep locators. It must be
- # identical to the permission key given to Keep. IMPORTANT: This is
- # a site secret. It should be at least 50 characters.
- #
- # Modifying blob_signing_key will invalidate all existing
- # signatures, which can cause programs to fail (e.g., arv-put,
- # arv-get, and Crunch jobs). To avoid errors, rotate keys only when
- # no such processes are running.
- blob_signing_key: key
-
- # These settings are provided by your OAuth2 provider (e.g.,
- # sso-provider).
- sso_app_secret: app_secret
- sso_app_id: arvados-server
- sso_provider_url: https://{{ .Values.externalIP }}:3002
-
- # If this is not false, HTML requests at the API server's root URL
- # are redirected to this location, and it is provided in the text of
- # user activation notification email messages to remind them where
- # to log in.
- workbench_address: false
-
- # Client-facing URI for websocket service. Nginx should be
- # configured to proxy this URI to arvados-ws; see
- # http://doc.arvados.org/install/install-ws.html
- #
- # If websocket_address is false (which is the default), no websocket
- # server will be advertised to clients. This configuration is not
- # supported.
- #
- # Example:
- #websocket_address: wss://ws.zzzzz.arvadosapi.com/websocket
- websocket_address: wss://{{ .Values.externalIP }}:9003/websocket
-
- # Maximum number of websocket connections allowed
- websocket_max_connections: 500
-
- # Maximum number of events a single connection can be backlogged
- websocket_max_notify_backlog: 1000
-
- # Maximum number of subscriptions a single websocket connection can have
- # active.
- websocket_max_filters: 10
-
- # Git repositories must be readable by api server, or you won't be
- # able to submit crunch jobs. To pass the test suites, put a clone
- # of the arvados tree in {git_repositories_dir}/arvados.git or
- # {git_repositories_dir}/arvados/.git
- git_repositories_dir: /var/lib/arvados/git/repositories
-
- # This is a (bare) repository that stores commits used in jobs. When a job
- # runs, the source commits are first fetched into this repository, then this
- # repository is used to deploy to compute nodes. This should NOT be a
- # subdirectory of {git_repositiories_dir}.
- git_internal_dir: /var/lib/arvados/internal.git
-
- # Default replication level for collections. This is used when a
- # collection's replication_desired attribute is nil.
- default_collection_replication: 2
-
-
- ###
- ### Overriding default advertised hostnames/URLs
- ###
-
- # If not false, this is the hostname that will be used for root_url and
- # advertised in the discovery document. By default, use the default Rails
- # logic for deciding on a hostname.
- host: false
-
- # Base part of SSH git clone url given with repository resources. If
- # true, the default "git@git.(uuid_prefix).arvadosapi.com:" is
- # used. If false, SSH clone URLs are not advertised. Include a
- # trailing ":" or "/" if needed: it will not be added automatically.
- git_repo_ssh_base: true
-
- # Base part of HTTPS git clone urls given with repository
- # resources. This is expected to be an arv-git-httpd service which
- # accepts API tokens as HTTP-auth passwords. If true, the default
- # "https://git.(uuid_prefix).arvadosapi.com/" is used. If false,
- # HTTPS clone URLs are not advertised. Include a trailing ":" or "/"
- # if needed: it will not be added automatically.
- git_repo_https_base: true
-
-
- ###
- ### New user and & email settings
- ###
-
- # Config parameters to automatically setup new users.
- # The params auto_setup_new_users_with_* are meaningful only when auto_setup_new_users is turned on.
- # auto_setup_name_blacklist is a list of usernames to be blacklisted for auto setup.
- auto_setup_new_users: true
- auto_setup_new_users_with_vm_uuid: false
- auto_setup_new_users_with_repository: false
- auto_setup_name_blacklist: [arvados, git, gitolite, gitolite-admin, root, syslog]
-
- # When new_users_are_active is set to true, the user agreement check is skipped.
- new_users_are_active: true
-
- # The e-mail address of the user you would like to become marked as an admin
- # user on their first login.
- # In the default configuration, authentication happens through the Arvados SSO
- # server, which uses OAuth2 against Google's servers, so in that case this
- # should be an address associated with a Google account.
- auto_admin_user: false
-
- # If auto_admin_first_user is set to true, the first user to log in when no
- # other admin users exist will automatically become an admin user.
- auto_admin_first_user: true
-
- # Email address to notify whenever a user creates a profile for the
- # first time
- user_profile_notification_address: false
-
- admin_notifier_email_from: arvados@example.com
- email_subject_prefix: "[ARVADOS] "
- user_notifier_email_from: arvados@example.com
- new_user_notification_recipients: [ ]
- new_inactive_user_notification_recipients: [ ]
-
-
- ###
- ### Limits, timeouts and durations
- ###
-
- # Lifetime (in seconds) of blob permission signatures generated by
- # the API server. This determines how long a client can take (after
- # retrieving a collection record) to retrieve the collection data
- # from Keep. If the client needs more time than that (assuming the
- # collection still has the same content and the relevant user/token
- # still has permission) the client can retrieve the collection again
- # to get fresh signatures.
- #
- # This must be exactly equal to the -blob-signature-ttl flag used by
- # keepstore servers. Otherwise, reading data blocks and saving
- # collections will fail with HTTP 403 permission errors.
- #
- # Modifying blob_signature_ttl invalidates existing signatures; see
- # blob_signing_key note above.
- #
- # The default is 2 weeks.
- blob_signature_ttl: 1209600
-
- # Default lifetime for ephemeral collections: 2 weeks. This must not
- # be less than blob_signature_ttl.
- default_trash_lifetime: 1209600
-
- # Interval (seconds) between trash sweeps. During a trash sweep,
- # collections are marked as trash if their trash_at time has
- # arrived, and deleted if their delete_at time has arrived.
- trash_sweep_interval: 60
-
- # Maximum characters of (JSON-encoded) query parameters to include
- # in each request log entry. When params exceed this size, they will
- # be JSON-encoded, truncated to this size, and logged as
- # params_truncated.
- max_request_log_params_size: 2000
-
- # Maximum size (in bytes) allowed for a single API request. This
- # limit is published in the discovery document for use by clients.
- # Note: You must separately configure the upstream web server or
- # proxy to actually enforce the desired maximum request size on the
- # server side.
- max_request_size: 134217728
-
- # Limit the number of bytes read from the database during an index
- # request (by retrieving and returning fewer rows than would
- # normally be returned in a single response).
- # Note 1: This setting never reduces the number of returned rows to
- # zero, no matter how big the first data row is.
- # Note 2: Currently, this is only checked against a specific set of
- # columns that tend to get large (collections.manifest_text,
- # containers.mounts, workflows.definition). Other fields (e.g.,
- # "properties" hashes) are not counted against this limit.
- max_index_database_read: 134217728
-
- # Maximum number of items to return when responding to a APIs that
- # can return partial result sets using limit and offset parameters
- # (e.g., *.index, groups.contents). If a request specifies a "limit"
- # parameter higher than this value, this value is used instead.
- max_items_per_response: 1000
-
- # When you run the db:delete_old_job_logs task, it will find jobs that
- # have been finished for at least this many seconds, and delete their
- # stderr logs from the logs table.
- clean_job_log_rows_after: <%= 30.days %>
-
- # When you run the db:delete_old_container_logs task, it will find
- # containers that have been finished for at least this many seconds,
- # and delete their stdout, stderr, arv-mount, crunch-run, and
- # crunchstat logs from the logs table.
- clean_container_log_rows_after: <%= 30.days %>
-
- # Time to keep audit logs, in seconds. (An audit log is a row added
- # to the "logs" table in the PostgreSQL database each time an
- # Arvados object is created, modified, or deleted.)
- #
- # Currently, websocket event notifications rely on audit logs, so
- # this should not be set lower than 600 (5 minutes).
- max_audit_log_age: 1209600
-
- # Maximum number of log rows to delete in a single SQL transaction.
- #
- # If max_audit_log_delete_batch is 0, log entries will never be
- # deleted by Arvados. Cleanup can be done by an external process
- # without affecting any Arvados system processes, as long as very
- # recent (<5 minutes old) logs are not deleted.
- #
- # 100000 is a reasonable batch size for most sites.
- max_audit_log_delete_batch: 0
-
- # The maximum number of compute nodes that can be in use simultaneously
- # If this limit is reduced, any existing nodes with slot number >= new limit
- # will not be counted against the new limit. In other words, the new limit
- # won't be strictly enforced until those nodes with higher slot numbers
- # go down.
- max_compute_nodes: 64
-
- # These two settings control how frequently log events are flushed to the
- # database. Log lines are buffered until either crunch_log_bytes_per_event
- # has been reached or crunch_log_seconds_between_events has elapsed since
- # the last flush.
- crunch_log_bytes_per_event: 4096
- crunch_log_seconds_between_events: 1
-
- # The sample period for throttling logs, in seconds.
- crunch_log_throttle_period: 60
-
- # Maximum number of bytes that job can log over crunch_log_throttle_period
- # before being silenced until the end of the period.
- crunch_log_throttle_bytes: 65536
-
- # Maximum number of lines that job can log over crunch_log_throttle_period
- # before being silenced until the end of the period.
- crunch_log_throttle_lines: 1024
-
- # Maximum bytes that may be logged by a single job. Log bytes that are
- # silenced by throttling are not counted against this total.
- crunch_limit_log_bytes_per_job: 67108864
-
- crunch_log_partial_line_throttle_period: 5
-
- # Attributes to suppress in events and audit logs. Notably,
- # specifying ["manifest_text"] here typically makes the database
- # smaller and faster.
- #
- # Warning: Using any non-empty value here can have undesirable side
- # effects for any client or component that relies on event logs.
- # Use at your own risk.
- unlogged_attributes: []
-
- # API methods to disable. Disabled methods are not listed in the
- # discovery document, and respond 404 to all requests.
- # Example: ["jobs.create", "pipeline_instances.create"]
- disable_api_methods: []
-
- ###
- ### Crunch, DNS & compute node management
- ###
-
- # Docker image to be used when none found in runtime_constraints of a job
- default_docker_image_for_jobs: false
-
- # List of supported Docker Registry image formats that compute nodes
- # are able to use. `arv keep docker` will error out if a user tries
- # to store an image with an unsupported format. Use an empty array
- # to skip the compatibility check (and display a warning message to
- # that effect).
- #
- # Example for sites running docker < 1.10: ["v1"]
- # Example for sites running docker >= 1.10: ["v2"]
- # Example for disabling check: []
- docker_image_formats: ["v2"]
-
- # :none or :slurm_immediate
- crunch_job_wrapper: :slurm_immediate
-
- # Disable the jobs api, in favor of the container api
- disable_api_methods: [ jobs.create, pipeline_instances.create, pipeline_templates.create,jobs.get, pipeline_instances.get, pipeline_templates.get, jobs.list, pipeline_instances.list, pipeline_templates.list, jobs.index, pipeline_instances.index, pipeline_templates.index, jobs.update, pipeline_instances.update, pipeline_templates.update, jobs.queue, jobs.queue_size, job_tasks.create, job_tasks.get, job_tasks.list, job_tasks.index, job_tasks.update, jobs.show, pipeline_instances.show, pipeline_templates.show, jobs.show, job_tasks.show ]
-
- # username, or false = do not set uid when running jobs.
- crunch_job_user: crunch
-
- # The web service must be able to create/write this file, and
- # crunch-job must be able to stat() it.
- crunch_refresh_trigger: /tmp/crunch_refresh_trigger
-
- # Path to dns server configuration directory
- # (e.g. /etc/unbound.d/conf.d). If false, do not write any config
- # files or touch restart.txt (see below).
- dns_server_conf_dir: false
-
- # Template file for the dns server host snippets. See
- # unbound.template in this directory for an example. If false, do
- # not write any config files.
- dns_server_conf_template: false
-
- # String to write to {dns_server_conf_dir}/restart.txt (with a
- # trailing newline) after updating local data. If false, do not
- # open or write the restart.txt file.
- dns_server_reload_command: false
-
- # Command to run after each DNS update. Template variables will be
- # substituted; see the "unbound" example below. If false, do not run
- # a command.
- dns_server_update_command: false
-
- ## Example for unbound:
- #dns_server_conf_dir: /etc/unbound/conf.d
- #dns_server_conf_template: /path/to/your/api/server/config/unbound.template
- ## ...plus one of the following two methods of reloading:
- #dns_server_reload_command: unbound-control reload
- #dns_server_update_command: echo %{hostname} %{hostname}.%{uuid_prefix} %{hostname}.%{uuid_prefix}.arvadosapi.com %{ptr_domain} | xargs -n 1 unbound-control local_data_remove && unbound-control local_data %{hostname} IN A %{ip_address} && unbound-control local_data %{hostname}.%{uuid_prefix} IN A %{ip_address} && unbound-control local_data %{hostname}.%{uuid_prefix}.arvadosapi.com IN A %{ip_address} && unbound-control local_data %{ptr_domain}. IN PTR %{hostname}.%{uuid_prefix}.arvadosapi.com
-
- compute_node_domain: false
- compute_node_nameservers:
- - 192.168.1.1
-
- # Hostname to assign to a compute node when it sends a "ping" and the
- # hostname in its Node record is nil.
- # During bootstrapping, the "ping" script is expected to notice the
- # hostname given in the ping response, and update its unix hostname
- # accordingly.
- # If false, leave the hostname alone (this is appropriate if your compute
- # nodes' hostnames are already assigned by some other mechanism).
- #
- # One way or another, the hostnames of your node records should agree
- # with your DNS records and your /etc/slurm-llnl/slurm.conf files.
- #
- # Example for compute0000, compute0001, ....:
- # assign_node_hostname: compute%<slot_number>04d
- # (See http://ruby-doc.org/core-2.2.2/Kernel.html#method-i-format for more.)
- assign_node_hostname: compute%<slot_number>d
-
-
- ###
- ### Job and container reuse logic.
- ###
-
- # Include details about job reuse decisions in the server log. This
- # causes additional database queries to run, so it should not be
- # enabled unless you expect to examine the resulting logs for
- # troubleshooting purposes.
- log_reuse_decisions: false
-
- # Control job reuse behavior when two completed jobs match the
- # search criteria and have different outputs.
- #
- # If true, in case of a conflict, reuse the earliest job (this is
- # similar to container reuse behavior).
- #
- # If false, in case of a conflict, do not reuse any completed job,
- # but do reuse an already-running job if available (this is the
- # original job reuse behavior, and is still the default).
- reuse_job_if_outputs_differ: false
-
- ###
- ### Federation support.
- ###
-
- # You can enable use of this cluster by users who are authenticated
- # by a remote Arvados site. Control which remote hosts are trusted
- # to authenticate which user IDs by configuring remote_hosts,
- # remote_hosts_via_dns, or both. The default configuration disables
- # remote authentication.
-
- # Map known prefixes to hosts. For example, if user IDs beginning
- # with "zzzzz-" should be authenticated by the Arvados server at
- # "zzzzz.example.com", use:
- #
- # remote_hosts:
- # zzzzz: zzzzz.example.com
- remote_hosts: {}
-
- # Use {prefix}.arvadosapi.com for any prefix not given in
- # remote_hosts above.
- remote_hosts_via_dns: false
-
- ###
- ### Remaining assorted configuration options.
- ###
-
- arvados_theme: default
-
- # Permit insecure (OpenSSL::SSL::VERIFY_NONE) connections to the
- # Single Sign On (sso) server and remote Arvados sites. Should only
- # be enabled during development when the SSO server is using a
- # self-signed cert.
- sso_insecure: true # TODO: Make this false.
-
- ## Set Time.zone default to the specified zone and make Active
- ## Record auto-convert to this zone. Run "rake -D time" for a list
- ## of tasks for finding time zone names. Default is UTC.
- #time_zone: Central Time (US & Canada)
-
- ## Default encoding used in templates for Ruby 1.9.
- encoding: utf-8
-
- # Enable the asset pipeline
- assets.enabled: true
-
- # Version of your assets, change this if you want to expire all your assets
- assets.version: "1.0"
-
- # Allow clients to create collections by providing a manifest with
- # unsigned data blob locators. IMPORTANT: This effectively disables
- # access controls for data stored in Keep: a client who knows a hash
- # can write a manifest that references the hash, pass it to
- # collections.create (which will create a permission link), use
- # collections.get to obtain a signature for that data locator, and
- # use that signed locator to retrieve the data from Keep. Therefore,
- # do not turn this on if your users expect to keep data private from
- # one another!
- permit_create_collection_with_unsigned_manifest: false
-
- default_openid_prefix: https://www.google.com/accounts/o8/id
-
- # Override the automatic version string. With the default value of
- # false, the version string is read from git-commit.version in
- # Rails.root (included in vendor packages) or determined by invoking
- # "git log".
- source_version: false
-
- # Enable asynchronous permission graph rebuild. Must run
- # script/permission-updater.rb as a separate process. When the permission
- # cache is invalidated, the background process will update the permission
- # graph cache. This feature is experimental!
- async_permissions_update: false
-
- # Default value for container_count_max for container requests. This is the
- # number of times Arvados will create a new container to satisfy a container
- # request. If a container is cancelled it will retry a new container if
- # container_count < container_count_max on any container requests associated
- # with the cancelled container.
- container_count_max: 3
-
- # Default value for keep_cache_ram of a container's runtime_constraints.
- container_default_keep_cache_ram: 268435456
-
- # Token to be included in all healthcheck requests. Disabled by default.
- # Server expects request header of the format "Authorization: Bearer xxx"
- ManagementToken: false
-
- # URL of keep-web service. Provides read/write access to collections via
- # HTTP and WebDAV protocols.
- #
- # Example:
- # keep_web_service_url: https://download.uuid_prefix.arvadosapi.com/
- keep_web_service_url: false
-
-development:
- force_ssl: false
- cache_classes: false
- whiny_nils: true
- consider_all_requests_local: true
- action_controller.perform_caching: false
- action_mailer.raise_delivery_errors: false
- action_mailer.perform_deliveries: false
- active_support.deprecation: :log
- action_dispatch.best_standards_support: :builtin
- active_record.auto_explain_threshold_in_seconds: 0.5
- assets.compress: false
- assets.debug: true
-
-production:
- force_ssl: true
- cache_classes: true
- consider_all_requests_local: false
- action_controller.perform_caching: true
- serve_static_files: false
- assets.compress: true
- assets.compile: false
- assets.digest: true
-
-test:
- force_ssl: false
- cache_classes: true
- serve_static_files: true
- static_cache_control: public, max-age=3600
- whiny_nils: true
- consider_all_requests_local: true
- action_controller.perform_caching: false
- action_dispatch.show_exceptions: false
- action_controller.allow_forgery_protection: false
- action_mailer.delivery_method: :test
- active_support.deprecation: :stderr
- uuid_prefix: zzzzz
- sso_app_id: arvados-server
- sso_app_secret: <%= rand(2**512).to_s(36) %>
- sso_provider_url: http://localhost:3002
- secret_token: <%= rand(2**512).to_s(36) %>
- blob_signing_key: zfhgfenhffzltr9dixws36j1yhksjoll2grmku38mi7yxd66h5j4q9w4jzanezacp8s6q0ro3hxakfye02152hncy6zml2ed0uc
- user_profile_notification_address: arvados@example.com
- workbench_address: https://localhost:3001/
- git_repositories_dir: <%= Rails.root.join 'tmp', 'git', 'test' %>
- git_internal_dir: <%= Rails.root.join 'tmp', 'internal.git' %>
- websocket_address: "wss://0.0.0.0:<%= ENV['ARVADOS_TEST_WSS_PORT'] %>/websocket"
- trash_sweep_interval: -1
- docker_image_formats: ["v2"]
# * `max_request_size` in the API server's application.yml file
client_max_body_size 128m;
}
-
-upstream api {
- server 127.0.0.1:8000 fail_timeout=10s;
-}
-
-proxy_http_version 1.1;
-
-# When Keep clients request a list of Keep services from the API server, the
-# server will automatically return the list of available proxies if
-# the request headers include X-External-Client: 1. Following the example
-# here, at the end of this section, add a line for each netmask that has
-# direct access to Keep storage daemons to set this header value to 0.
-geo $external_client {
- default 1;
- 10.0.0.0/8 0;
-}
-
-server {
- listen 0.0.0.0:444 ssl;
- server_name public-api;
-
- ssl on;
- ssl_certificate /etc/ssl/certs/api-server.pem;
- ssl_certificate_key /etc/ssl/private/api-server.key;
-
- index index.html index.htm index.php;
-
- # Refer to the comment about this setting in the server section above.
- client_max_body_size 128m;
-
- location / {
- proxy_pass http://api;
- proxy_redirect off;
- proxy_connect_timeout 90s;
- proxy_read_timeout 300s;
-
- proxy_set_header X-Forwarded-Proto https;
- proxy_set_header Host $http_host;
- proxy_set_header X-External-Client $external_client;
- proxy_set_header X-Real-IP $remote_addr;
- proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
- }
-}
--- /dev/null
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+Clusters:
+ {{ .Values.uuidPrefix }}:
+ SystemRootToken: wifieSh9voog8Bae0ahgeG5aechee4Ahloo0Aiw8Aeg4Eiceiy6ku9Eghipha6an
+ API:
+ RailsSessionSecretToken: changeme
+ Workbench:
+ SecretKeyBase: ooTho2Ek8ainiegiong7eiGh2te2roP6aevaigheerizahquee2shahziengoh3y
+ Collections:
+ BlobSigningKey: EiFohx9soofaifo0Fe3mizoo4Aey8ahNiepaik8daiQuohthu9ohH6Kaegu8uDoo
+ TrustAllContent: true
+ TLS:
+ Insecure: true
+ Containers:
+ Logging:
+ LogSecondsBetweenEvents: 1s
+ SLURM:
+ SbatchArgumentsList:
+ - "--workdir=/tmp"
+ Managed:
+ DNSServerConfDir: /tmp
+ DNSServerConfTemplate: /var/www/arvados-api/current/config/unbound.template
+ Login:
+ ProviderAppID: arvados-server
+ ProviderAppSecret: app_secret
+ PostgreSQL:
+ Connection:
+ dbname: arvados_production
+ host: arvados-postgres
+ password: pw
+ user: arvados
+ sslmode: disable
+ Volumes:
+ {{ .Values.uuidPrefix }}-nyw5e-1dz1sonsidjvh68:
+ AccessViaHosts:
+ http://arvados-keep-store-0.arvados-keep-store:25107:
+ ReadOnly: false
+ Driver: Directory
+ DriverParameters:
+ Root: /keepdata
+ Serialize: true
+ ReadOnly: false
+ Replication: 1
+ StorageClasses: null
+ {{ .Values.uuidPrefix }}-nyw5e-a8ft6s4nnwavrlb:
+ AccessViaHosts:
+ http://arvados-keep-store-1.arvados-keep-store:25107:
+ ReadOnly: false
+ Driver: Directory
+ DriverParameters:
+ Root: /keepdata
+ Serialize: true
+ ReadOnly: false
+ Replication: 1
+ StorageClasses: null
+ Services:
+ Controller:
+ ExternalURL: https://{{ .Values.externalIP }}:444
+ InternalURLs:
+ "http://0.0.0.0:9004": {}
+ RailsAPI:
+ ExternalURL: "-"
+ InternalURLs:
+ "http://localhost:8000": {}
+ GitHTTP:
+ ExternalURL: https://git.{{ .Values.uuidPrefix }}.arvadosapi.com/
+ GitSSH:
+ ExternalURL: ssh://git.{{ .Values.uuidPrefix }}.arvadosapi.com
+ Keepproxy:
+ ExternalURL: "https://{{ .Values.externalIP }}:25107"
+ InternalURLs:
+ "http://localhost:25106": {}
+ Keepstore:
+ ExternalURL: '-'
+ InternalURLs:
+ http://arvados-keep-store-0.arvados-keep-store:25107: {}
+ http://arvados-keep-store-1.arvados-keep-store:25107: {}
+ SSO:
+ ExternalURL: https://{{ .Values.externalIP }}:3002
+ WebDAV:
+ ExternalURL: https://{{ .Values.externalIP }}:9002
+ InternalURLs:
+ "http://localhost:29002": {}
+ Websocket:
+ ExternalURL: wss://{{ .Values.externalIP }}:9003/websocket
+ InternalURLs:
+ "http://localhost:29003": {}
+ Workbench1:
+ ExternalURL: https://{{ .Values.externalIP }}
+ TLS:
+ Insecure: true
+ Users:
+ AutoAdminFirstUser: true
+ AutoSetupNewUsers: true
+ NewUsersAreActive: true
+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: Apache-2.0
-
-Client:
- APIHost: {{ .Values.externalIP }}:444
- AuthToken: {{ .Values.superUserSecret }}
- Insecure: true
-PollPeriod: 5000ms
-MinRetryPeriod: 30s
-SbatchArguments:
-- "--workdir=/tmp"
psql -v ON_ERROR_STOP=1 --username "$POSTGRES_USER" <<-EOSQL
CREATE USER $user WITH CREATEDB PASSWORD '$password';
CREATE DATABASE $database OWNER $user;
+EOSQL
+ psql -v ON_ERROR_STOP=1 "$database" --username "$POSTGRES_USER" <<-EOSQL
+ CREATE EXTENSION IF NOT EXISTS pg_trgm WITH SCHEMA public;
EOSQL
}
create_user_and_database arvados_sso_production arvados_sso pw
create_user_and_database arvados_production arvados pw
+
###
# If true, allow new creation of new accounts in the SSO server's internal
# user database.
- allow_account_registration: false
+ allow_account_registration: true
# If true, send an email confirmation before activating new accounts in the
# SSO server's internal user database.
+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: Apache-2.0
-
-Client:
- APIHost: arvados-api-server:444
- Insecure: true
-Listen: ":9003"
-Postgres:
- dbname: arvados_production
- host: arvados-postgres
- password: pw
- user: arvados
- sslmode: disable
--- /dev/null
+#!/bin/bash
+
+EXTERNAL_IP=$1
+
+if [[ -z "$EXTERNAL_IP" ]]; then
+ EXTERNAL_IP=`minikube ip`
+fi
+
+if [[ -z "$EXTERNAL_IP" ]]; then
+ echo "Syntax: $0 <external_ip>"
+ echo "I tried running `minikube ip` but that failed"
+ exit 1
+fi
+
+kubectl patch service arvados-api-server -p "{\"spec\": {\"type\": \"LoadBalancer\", \"externalIPs\":[\"$EXTERNAL_IP\"]}}"
+kubectl patch service arvados-keep-proxy -p "{\"spec\": {\"type\": \"LoadBalancer\", \"externalIPs\":[\"$EXTERNAL_IP\"]}}"
+kubectl patch service arvados-keep-web -p "{\"spec\": {\"type\": \"LoadBalancer\", \"externalIPs\":[\"$EXTERNAL_IP\"]}}"
+kubectl patch service arvados-sso -p "{\"spec\": {\"type\": \"LoadBalancer\", \"externalIPs\":[\"$EXTERNAL_IP\"]}}"
+kubectl patch service arvados-workbench -p "{\"spec\": {\"type\": \"LoadBalancer\", \"externalIPs\":[\"$EXTERNAL_IP\"]}}"
+kubectl patch service arvados-ws -p "{\"spec\": {\"type\": \"LoadBalancer\", \"externalIPs\":[\"$EXTERNAL_IP\"]}}"
+
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
data:
-{{ (tpl (.Files.Glob "config/api-server/*").AsConfig . ) | indent 2 }}
+ {{- (tpl (.Files.Glob "config/api-server/*").AsConfig . ) | nindent 2 }}
+
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+ name: arvados-api-server-https-configmap
+ labels:
+ app: {{ template "arvados.name" . }}
+ chart: {{ template "arvados.chart" . }}
+ release: {{ .Release.Name }}
+ heritage: {{ .Release.Service }}
+data:
+ nginx.conf: |
+ upstream controller {
+ server 127.0.0.1:9004;
+ }
+
+ proxy_http_version 1.1;
+
+ # When Keep clients request a list of Keep services from the API server, the
+ # server will automatically return the list of available proxies if
+ # the request headers include X-External-Client: 1. Following the example
+ # here, at the end of this section, add a line for each netmask that has
+ # direct access to Keep storage daemons to set this header value to 0.
+ geo $external_client {
+ default 1;
+ 10.0.0.0/8 0;
+ }
+
+ server {
+ listen 444 ssl;
+ server_name public-api;
+
+ ssl_certificate /etc/nginx/ssl.crt;
+ ssl_certificate_key /etc/nginx/ssl.key;
+
+ client_max_body_size 128m;
+
+ # Redirect plain HTTP requests to HTTPS.
+ error_page 497 301 =307 https://$host:$server_port$request_uri;
+
+ location / {
+ proxy_pass http://controller;
+ proxy_connect_timeout 90s;
+ proxy_read_timeout 300s;
+ proxy_redirect off;
+ proxy_set_header X-Forwarded-Proto https;
+ proxy_set_header Host $http_host;
+ proxy_set_header X-External-Client $external_client;
+ proxy_set_header X-Real-IP $remote_addr;
+ proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+ }
+ }
- name: api-server-configmap
mountPath: /etc/arvados/api/database.yml
subPath: database.yml
- - name: api-server-configmap
- mountPath: /etc/arvados/api/application.yml
- subPath: application.yml
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
- name: api-server-configmap
mountPath: /create-workbench-api-client.rb
subPath: create-workbench-api-client.rb
- name: api-server-configmap
mountPath: /etc/nginx/sites-enabled/api-server.conf
subPath: nginx.conf
+ - name: arvados-controller
+ image: "cure/arvados-runtime"
+ imagePullPolicy: {{ .Values.image.pullPolicy }}
+ command:
+ - "sh"
+ - "-c"
+ - "/usr/local/bin/bootstrap.sh arvados-controller={{ .Values.arvados.versions.distribution.arvadosController }} && arvados-controller"
+ volumeMounts:
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
+ - name: nginx
+ image: "nginx:1.17"
+ imagePullPolicy: {{ .Values.image.pullPolicy }}
+ volumeMounts:
+ - name: nginx-configmap
+ mountPath: /etc/nginx/conf.d/default.conf
+ subPath: nginx.conf
- name: ssl-configmap
- mountPath: /etc/ssl/certs/api-server.pem
+ mountPath: /etc/nginx/ssl.crt
subPath: cert
- name: ssl-configmap
- mountPath: /etc/ssl/private/api-server.key
+ mountPath: /etc/nginx/ssl.key
subPath: key
volumes:
- name: api-server-configmap
configMap:
name: arvados-api-server-configmap
+ - name: etc-configmap
+ configMap:
+ name: etc-configmap
- name: ssl-configmap
configMap:
name: ssl-configmap
+ - name: nginx-configmap
+ configMap:
+ name: arvados-api-server-https-configmap
+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: Apache-2.0
-
-apiVersion: v1
-kind: ConfigMap
-metadata:
- name: crunch-dispatch-slurm-configmap
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-data:
-{{ (tpl (.Files.Glob "config/crunch-dispatch-slurm/*").AsConfig . ) | indent 2 }}
app: arvados-crunch-dispatch-slurm
release: {{ .Release.Name }}
spec:
+ dnsConfig:
+ searches:
+ - "arvados-slurm-compute.default.svc.cluster.local"
containers:
- name: {{ .Chart.Name }}
image: "cure/arvados-slurm-runtime"
- name : ARVADOS_API_TOKEN
value: "{{ .Values.superUserSecret }}"
volumeMounts:
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
- name: slurm-configmap
mountPath: /etc/slurm-llnl/slurm.conf
subPath: slurm.conf
- name: slurm-configmap
mountPath: /etc/munge/munge.key
subPath: munge.key
- - name: crunch-dispatch-slurm-configmap
- mountPath: /etc/arvados/crunch-dispatch-slurm/crunch-dispatch-slurm.yml
- subPath: crunch-dispatch-slurm.yml
volumes:
+ - name: etc-configmap
+ configMap:
+ name: etc-configmap
- name: slurm-configmap
configMap:
name: slurm-configmap
defaultMode: 0400
- - name: crunch-dispatch-slurm-configmap
- configMap:
- name: crunch-dispatch-slurm-configmap
-
apiVersion: v1
kind: ConfigMap
metadata:
- name: arvados-keep-store-configmap
+ name: etc-configmap
labels:
app: {{ template "arvados.name" . }}
chart: {{ template "arvados.chart" . }}
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
data:
- blob-signing.key: key
+ {{- (tpl (.Files.Glob "config/config.yml").AsConfig . ) | nindent 2 }}
--- /dev/null
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+ name: arvados-keep-proxy-https-configmap
+ labels:
+ app: {{ template "arvados.name" . }}
+ chart: {{ template "arvados.chart" . }}
+ release: {{ .Release.Name }}
+ heritage: {{ .Release.Service }}
+data:
+ nginx.conf: |
+ upstream httpContainer {
+ server 127.0.0.1:25106;
+ }
+
+ server {
+ listen 25107 ssl;
+ server_name arvados-keep-proxy-https;
+
+ ssl_certificate /etc/nginx/ssl.crt;
+ ssl_certificate_key /etc/nginx/ssl.key;
+
+ # Clients need to be able to upload blocks of data up to 64MiB in size.
+ client_body_buffer_size 64M;
+ client_max_body_size 64m;
+
+ # Redirect plain HTTP requests to HTTPS.
+ error_page 497 301 =307 https://$host:$server_port$request_uri;
+
+ location / {
+ proxy_pass http://httpContainer;
+ proxy_connect_timeout 90s;
+ proxy_read_timeout 300s;
+ proxy_redirect off;
+ proxy_set_header X-Forwarded-Proto https;
+ proxy_set_header Host $host:$server_port;
+ proxy_set_header X-Real-IP $remote_addr;
+ proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+ }
+ }
release: {{ .Release.Name }}
spec:
containers:
- - name: arvados-keep-proxy
+ - name: keep-proxy
image: "cure/arvados-runtime"
imagePullPolicy: {{ .Values.image.pullPolicy }}
command:
value: "true"
- name : ARVADOS_API_TOKEN
value: "{{ .Values.anonymousUserSecret }}"
+ volumeMounts:
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
+ - name: nginx
+ image: "nginx:1.17"
+ imagePullPolicy: {{ .Values.image.pullPolicy }}
+ volumeMounts:
+ - name: nginx-configmap
+ mountPath: /etc/nginx/conf.d/default.conf
+ subPath: nginx.conf
+ - name: ssl-configmap
+ mountPath: /etc/nginx/ssl.crt
+ subPath: cert
+ - name: ssl-configmap
+ mountPath: /etc/nginx/ssl.key
+ subPath: key
+ volumes:
+ - name: etc-configmap
+ configMap:
+ name: etc-configmap
+ - name: ssl-configmap
+ configMap:
+ name: ssl-configmap
+ - name: nginx-configmap
+ configMap:
+ name: arvados-keep-proxy-https-configmap
+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: Apache-2.0
-
----
-apiVersion: apps/v1
-kind: Deployment
-metadata:
- name: arvados-keep-proxy-https
- labels:
- app: arvados-keep-proxy-https
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-spec:
- selector:
- matchLabels:
- app: arvados-keep-proxy-https
- release: {{ .Release.Name }}
- template:
- metadata:
- labels:
- app: arvados-keep-proxy-https
- release: {{ .Release.Name }}
- spec:
- containers:
- - name: {{ .Chart.Name }}
- image: "nginx:1.10"
- imagePullPolicy: {{ .Values.image.pullPolicy }}
- volumeMounts:
- - name: nginx-configmap
- mountPath: /etc/nginx/conf.d/default.conf
- subPath: nginx.conf
- - name: ssl-configmap
- mountPath: /etc/nginx/ssl.crt
- subPath: cert
- - name: ssl-configmap
- mountPath: /etc/nginx/ssl.key
- subPath: key
- volumes:
- - name: ssl-configmap
- configMap:
- name: ssl-configmap
- - name: nginx-configmap
- configMap:
- name: arvados-keep-proxy-https-configmap
----
-apiVersion: v1
-kind: ConfigMap
-metadata:
- name: arvados-keep-proxy-https-configmap
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-data:
- nginx.conf: |
- upstream httpContainer {
- server arvados-keep-proxy:25107;
- }
-
- server {
- listen 0.0.0.0:25107 ssl;
- server_name arvados-keep-proxy-https;
-
- ssl on;
- ssl_certificate /etc/nginx/ssl.crt;
- ssl_certificate_key /etc/nginx/ssl.key;
-
- # Clients need to be able to upload blocks of data up to 64MiB in size.
- client_body_buffer_size 64M;
- client_max_body_size 64m;
-
- # Redirect plain HTTP requests to HTTPS.
- error_page 497 301 =307 https://$host:$server_port$request_uri;
-
- location / {
- proxy_pass http://httpContainer;
- proxy_connect_timeout 90s;
- proxy_read_timeout 300s;
- proxy_redirect off;
- proxy_set_header X-Forwarded-Proto https;
- proxy_set_header Host $host:$server_port;
- proxy_set_header X-Real-IP $remote_addr;
- proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
- }
- }
----
-apiVersion: v1
-kind: Service
-metadata:
- name: arvados-keep-proxy-https
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-spec:
- type: LoadBalancer
- loadBalancerIP: {{ required "A valid externalIP is required!" .Values.externalIP }}
- ports:
- - name: https
- port: 25107
- targetPort: 25107
- protocol: TCP
- selector:
- app: arvados-keep-proxy-https
#
# SPDX-License-Identifier: Apache-2.0
+---
apiVersion: v1
kind: Service
metadata:
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
spec:
+ type: LoadBalancer
+ loadBalancerIP: {{ required "A valid externalIP is required!" .Values.externalIP }}
ports:
- - name: http
+ - name: https
port: 25107
targetPort: 25107
protocol: TCP
command:
- "sh"
- "-c"
- - "mkdir /keepdata && /usr/local/bin/bootstrap.sh keepstore={{ .Values.arvados.versions.distribution.keepStore }} && GOGC=10 keepstore -enforce-permissions=true -blob-signing-key-file=/etc/keepstore/blob-signing.key -max-buffers=100 -serialize=true -never-delete=false -volume=/keepdata"
+ - "mkdir /keepdata && /usr/local/bin/bootstrap.sh keepstore={{ .Values.arvados.versions.distribution.keepStore }} && GOGC=10 keepstore"
volumeMounts:
- - name: keep-store-configmap
- mountPath: /etc/keepstore/blob-signing.key
- subPath: blob-signing.key
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
volumes:
- - name: keep-store-configmap
+ - name: etc-configmap
configMap:
- name: arvados-keep-store-configmap
+ name: etc-configmap
+
--- /dev/null
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+ name: arvados-keep-web-https-configmap
+ labels:
+ app: {{ template "arvados.name" . }}
+ chart: {{ template "arvados.chart" . }}
+ release: {{ .Release.Name }}
+ heritage: {{ .Release.Service }}
+data:
+ nginx.conf: |
+ upstream httpContainer {
+ server 127.0.0.1:29002;
+ }
+
+ server {
+ listen 9002 ssl;
+ server_name arvados-keep-web-https;
+
+ proxy_connect_timeout 90s;
+ proxy_read_timeout 300s;
+ proxy_set_header X-Real-IP $remote_addr;
+
+ ssl_certificate /etc/nginx/ssl.crt;
+ ssl_certificate_key /etc/nginx/ssl.key;
+
+ # Clients need to be able to upload blocks of data up to 64MiB in size.
+ client_max_body_size 64m;
+
+ # Redirect plain HTTP requests to HTTPS.
+ error_page 497 301 =307 https://$host:$server_port$request_uri;
+
+ location / {
+ proxy_pass http://httpContainer;
+ proxy_set_header Upgrade $http_upgrade;
+ proxy_set_header Connection "upgrade";
+ proxy_set_header Host $host:$server_port;
+ proxy_set_header X-Forwarded-For $remote_addr;
+ }
+ }
command:
- "sh"
- "-c"
- - "/usr/local/bin/bootstrap.sh keep-web={{ .Values.arvados.versions.distribution.keepWeb }} && keep-web -listen=:9002 -trust-all-content"
+ - "/usr/local/bin/bootstrap.sh mime-support keep-web={{ .Values.arvados.versions.distribution.keepWeb }} && keep-web"
env:
- name : ARVADOS_API_HOST
value: "{{ .Values.externalIP }}:444"
value: "true"
- name : ARVADOS_API_TOKEN
value: "{{ .Values.anonymousUserSecret }}"
+ volumeMounts:
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
+ - name: arvados-keep-web-https
+ image: "nginx:1.17"
+ imagePullPolicy: {{ .Values.image.pullPolicy }}
+ volumeMounts:
+ - name: nginx-configmap
+ mountPath: /etc/nginx/conf.d/default.conf
+ subPath: nginx.conf
+ - name: ssl-configmap
+ mountPath: /etc/nginx/ssl.crt
+ subPath: cert
+ - name: ssl-configmap
+ mountPath: /etc/nginx/ssl.key
+ subPath: key
+ volumes:
+ - name: etc-configmap
+ configMap:
+ name: etc-configmap
+ - name: ssl-configmap
+ configMap:
+ name: ssl-configmap
+ - name: nginx-configmap
+ configMap:
+ name: arvados-keep-web-https-configmap
+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: Apache-2.0
-
----
-apiVersion: apps/v1
-kind: Deployment
-metadata:
- name: arvados-keep-web-https
- labels:
- app: arvados-keep-web-https
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-spec:
- selector:
- matchLabels:
- app: arvados-keep-web-https
- release: {{ .Release.Name }}
- template:
- metadata:
- labels:
- app: arvados-keep-web-https
- release: {{ .Release.Name }}
- spec:
- containers:
- - name: {{ .Chart.Name }}
- image: "nginx:1.10"
- imagePullPolicy: {{ .Values.image.pullPolicy }}
- volumeMounts:
- - name: nginx-configmap
- mountPath: /etc/nginx/conf.d/default.conf
- subPath: nginx.conf
- - name: ssl-configmap
- mountPath: /etc/nginx/ssl.crt
- subPath: cert
- - name: ssl-configmap
- mountPath: /etc/nginx/ssl.key
- subPath: key
- volumes:
- - name: ssl-configmap
- configMap:
- name: ssl-configmap
- - name: nginx-configmap
- configMap:
- name: arvados-keep-web-https-configmap
----
-apiVersion: v1
-kind: ConfigMap
-metadata:
- name: arvados-keep-web-https-configmap
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-data:
- nginx.conf: |
- upstream httpContainer {
- server arvados-keep-web:9002;
- }
-
- server {
- listen 0.0.0.0:9002 ssl;
- server_name arvados-keep-web-https;
-
- proxy_connect_timeout 90s;
- proxy_read_timeout 300s;
- proxy_set_header X-Real-IP $remote_addr;
-
- ssl on;
- ssl_certificate /etc/nginx/ssl.crt;
- ssl_certificate_key /etc/nginx/ssl.key;
-
- # Clients need to be able to upload blocks of data up to 64MiB in size.
- client_max_body_size 64m;
-
- # Redirect plain HTTP requests to HTTPS.
- error_page 497 301 =307 https://$host:$server_port$request_uri;
-
- location / {
- proxy_pass http://httpContainer;
- proxy_set_header Upgrade $http_upgrade;
- proxy_set_header Connection "upgrade";
- proxy_set_header Host $host:$server_port;
- proxy_set_header X-Forwarded-For $remote_addr;
- }
- }
----
-apiVersion: v1
-kind: Service
-metadata:
- name: arvados-keep-web-https
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-spec:
- type: LoadBalancer
- loadBalancerIP: {{ required "A valid externalIP is required!" .Values.externalIP }}
- ports:
- - name: https
- port: 9002
- targetPort: 9002
- protocol: TCP
- selector:
- app: arvados-keep-web-https
#
# SPDX-License-Identifier: Apache-2.0
+---
apiVersion: v1
kind: Service
metadata:
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
spec:
+ type: LoadBalancer
+ loadBalancerIP: {{ required "A valid externalIP is required!" .Values.externalIP }}
ports:
- - name: http
+ - name: https
port: 9002
targetPort: 9002
protocol: TCP
- name: {{ .Chart.Name }}
image: "postgres:9.5"
imagePullPolicy: {{ .Values.image.pullPolicy }}
+ env:
+ - name: POSTGRES_HOST_AUTH_METHOD
+ value: "trust"
volumeMounts:
- name: postgres-configmap
mountPath: /docker-entrypoint-initdb.d/create_dbs.sh
app: arvados-slurm-compute
release: {{ .Release.Name }}
spec:
+ dnsConfig:
+ searches:
+ - "arvados-slurm-compute.default.svc.cluster.local"
terminationGracePeriodSeconds: 1
containers:
- name: {{ .Chart.Name }}
defaultMode: 0400
- name: docker-graph-storage
emptyDir: {}
-
-# - "/usr/local/bin/bootstrap.sh crunch-dispatch-slurm={{ .Values.arvados.versions.distribution.crunchDispatchSlurm }} && chown munge /etc/munge/munge.key && chmod 0400 /etc/munge/munge.key && sudo -u munge munged && slurmctld -D && crunch-dispatch-slurm"
-# - "/usr/local/bin/bootstrap.sh crunch-dispatch-slurm={{ .Values.arvados.versions.distribution.crunchDispatchSlurm }} && sudo -u munge munged && slurmctld -D && crunch-dispatch-slurm"
-# - "/usr/local/bin/bootstrap.sh crunch-dispatch-slurm={{ .Values.arvados.versions.distribution.crunchDispatchSlurm }} && crunch-dispatch-slurm"
-
-# for slurm client, compute node
-# - "/usr/local/bin/bootstrap.sh python-arvados-python-client={{ .Values.arvados.versions.distribution.pythonArvadosPythonClient }} crunch-run={{ .Values.arvados.versions.distribution.crunchRun }} python-arvados-fuse={{ .Values.arvados.versions.distribution.pythonArvadosFuse }} && chown munge /etc/munge/munge.key; chmod 0400 /etc/munge/munge.key; sudo -u munge munged && slurmd -D"
configMap:
name: slurm-configmap
defaultMode: 0400
-
- port: 6817
protocol: TCP
selector:
- app: arvados-slurm-controller
+ app: arvados-slurm-controller-0
- name: RAILS_ENV
value: "production"
volumeMounts:
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
- name: workbench-configmap
mountPath: /etc/arvados/workbench/application.yml
subPath: application.yml
mountPath: /etc/ssl/private/workbench.key
subPath: key
volumes:
+ - name: etc-configmap
+ configMap:
+ name: etc-configmap
- name: workbench-configmap
configMap:
name: arvados-workbench-configmap
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
data:
-{{ (.Files.Glob "config/ws/*").AsConfig | indent 2 }}
+ {{- (tpl (.Files.Glob "config/ws/*").AsConfig . ) | nindent 2 }}
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+ name: arvados-ws-https-configmap
+ labels:
+ app: {{ template "arvados.name" . }}
+ chart: {{ template "arvados.chart" . }}
+ release: {{ .Release.Name }}
+ heritage: {{ .Release.Service }}
+data:
+ nginx.conf: |
+ upstream httpContainer {
+ server 127.0.0.1:29003;
+ }
+
+ server {
+ listen 9003 ssl;
+ server_name arvados-ws-https;
+
+ proxy_connect_timeout 90s;
+ proxy_read_timeout 300s;
+ proxy_set_header X-Real-IP $remote_addr;
+
+ ssl_certificate /etc/nginx/ssl.crt;
+ ssl_certificate_key /etc/nginx/ssl.key;
+
+ # Clients need to be able to upload blocks of data up to 64MiB in size.
+ client_max_body_size 64m;
+
+ # Redirect plain HTTP requests to HTTPS.
+ error_page 497 301 =307 https://$host:$server_port$request_uri;
+
+ location / {
+ proxy_pass http://httpContainer;
+ proxy_set_header Upgrade $http_upgrade;
+ proxy_set_header Connection "upgrade";
+ proxy_set_header Host $host:$server_port;
+ proxy_set_header X-Forwarded-For $remote_addr;
+ }
+ }
- "-c"
- "/usr/local/bin/bootstrap.sh arvados-ws={{ .Values.arvados.versions.distribution.arvadosWs }} && arvados-ws"
volumeMounts:
- - name: ws-configmap
- mountPath: /etc/arvados/ws/ws.yml
- subPath: ws.yml
+ - name: etc-configmap
+ mountPath: /etc/arvados/config.yml
+ subPath: config.yml
+ - name: arvados-ws-https
+ image: "nginx:1.17"
+ imagePullPolicy: {{ .Values.image.pullPolicy }}
+ volumeMounts:
+ - name: nginx-configmap
+ mountPath: /etc/nginx/conf.d/default.conf
+ subPath: nginx.conf
+ - name: ssl-configmap
+ mountPath: /etc/nginx/ssl.crt
+ subPath: cert
+ - name: ssl-configmap
+ mountPath: /etc/nginx/ssl.key
+ subPath: key
volumes:
- - name: ws-configmap
+ - name: etc-configmap
+ configMap:
+ name: etc-configmap
+ - name: ssl-configmap
+ configMap:
+ name: ssl-configmap
+ - name: nginx-configmap
configMap:
- name: arvados-ws-configmap
+ name: arvados-ws-https-configmap
+++ /dev/null
-# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: Apache-2.0
-
----
-apiVersion: apps/v1
-kind: Deployment
-metadata:
- name: arvados-ws-https
- labels:
- app: arvados-ws-https
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-spec:
- selector:
- matchLabels:
- app: arvados-ws-https
- release: {{ .Release.Name }}
- template:
- metadata:
- labels:
- app: arvados-ws-https
- release: {{ .Release.Name }}
- spec:
- containers:
- - name: {{ .Chart.Name }}
- image: "nginx:1.10"
- imagePullPolicy: {{ .Values.image.pullPolicy }}
- volumeMounts:
- - name: nginx-configmap
- mountPath: /etc/nginx/conf.d/default.conf
- subPath: nginx.conf
- - name: ssl-configmap
- mountPath: /etc/nginx/ssl.crt
- subPath: cert
- - name: ssl-configmap
- mountPath: /etc/nginx/ssl.key
- subPath: key
- volumes:
- - name: ssl-configmap
- configMap:
- name: ssl-configmap
- - name: nginx-configmap
- configMap:
- name: arvados-ws-https-configmap
----
-apiVersion: v1
-kind: ConfigMap
-metadata:
- name: arvados-ws-https-configmap
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-data:
- nginx.conf: |
- upstream httpContainer {
- server arvados-ws:9003;
- }
-
- server {
- listen 0.0.0.0:9003 ssl;
- server_name arvados-ws-https;
-
- proxy_connect_timeout 90s;
- proxy_read_timeout 300s;
- proxy_set_header X-Real-IP $remote_addr;
-
- ssl on;
- ssl_certificate /etc/nginx/ssl.crt;
- ssl_certificate_key /etc/nginx/ssl.key;
-
- # Clients need to be able to upload blocks of data up to 64MiB in size.
- client_max_body_size 64m;
-
- # Redirect plain HTTP requests to HTTPS.
- error_page 497 301 =307 https://$host:$server_port$request_uri;
-
- location / {
- proxy_pass http://httpContainer;
- proxy_set_header Upgrade $http_upgrade;
- proxy_set_header Connection "upgrade";
- proxy_set_header Host $host:$server_port;
- proxy_set_header X-Forwarded-For $remote_addr;
- }
- }
----
-apiVersion: v1
-kind: Service
-metadata:
- name: arvados-ws-https
- labels:
- app: {{ template "arvados.name" . }}
- chart: {{ template "arvados.chart" . }}
- release: {{ .Release.Name }}
- heritage: {{ .Release.Service }}
-spec:
- type: LoadBalancer
- loadBalancerIP: {{ required "A valid externalIP is required!" .Values.externalIP }}
- ports:
- - name: https
- port: 9003
- targetPort: 9003
- protocol: TCP
- selector:
- app: arvados-ws-https
#
# SPDX-License-Identifier: Apache-2.0
+---
apiVersion: v1
kind: Service
metadata:
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
spec:
+ type: LoadBalancer
+ loadBalancerIP: {{ required "A valid externalIP is required!" .Values.externalIP }}
ports:
- - name: http
+ - name: https
port: 9003
targetPort: 9003
protocol: TCP
arvados:
versions:
distribution:
- arvadosApiServer: 1.3.1-1
- arvadosGitHttpd: 1.3.1-1
- arvadosHealth: 1.3.1-1
- arvadosWorkbench: 1.3.1-1
- arvadosWs: 1.3.1-1
+ arvadosApiServer: 2.0.2-1
+ arvadosController: 2.0.2-1
+ arvadosGitHttpd: 2.0.2-1
+ arvadosHealth: 2.0.2-1
+ arvadosWorkbench: 2.0.2-1
+ arvadosWs: 2.0.2-1
arvadosSSOServer: 1.1.4-1
- crunchDispatchSlurm: 1.3.1-1
- crunchRun: 1.3.1-1
- crunchRunner: 1.3.1-1
- keepBalance: 1.3.1-1
- keepStore: 1.3.1-1
- keepWeb: 1.3.1-1
- keepProxy: 1.3.1-1
- libPamArvados: 1.3.1-1
- pythonArvadosFuse: 1.3.1-1
- pythonArvadosPythonClient: 1.3.1-1
+ crunchDispatchSlurm: 2.0.2-1
+ crunchRun: 2.0.2-1
+ crunchRunner: 2.0.2-1
+ keepBalance: 2.0.2-1
+ keepStore: 2.0.2-1
+ keepWeb: 2.0.2-1
+ keepProxy: 2.1.0.dev20200422013447-1
+ libPamArvados: 2.0.2-1
+ pythonArvadosFuse: 2.0.2-1
+ pythonArvadosPythonClient: 2.0.2-1
gem:
- arvados: 1.3.1.20190122164002
- arvadosCLI: 1.3.1.20190211211047
- arvadosLoginSync: 1.3.1.20190211211047
+ arvados: 2.0.2
+ arvadosCLI: 2.0.2
+ arvadosLoginSync: 2.0.2
RUN apt-get update && apt-get install -y gnupg2 ca-certificates
RUN echo "deb http://apt.arvados.org/ bionic main" > /etc/apt/sources.list.d/apt.arvados.org.list
+RUN echo "deb http://apt.arvados.org/ bionic-dev main" >> /etc/apt/sources.list.d/apt.arvados.org.list
ADD 1078ECD7.asc /tmp/
RUN cat /tmp/1078ECD7.asc | apt-key add -
projects / arvados-k8s.git / commitdiff