#!/bin/bash # Copyright (C) The Arvados Authors. All rights reserved. # # SPDX-License-Identifier: AGPL-3.0 set -o pipefail DEBUG=0 SSH_PORT=22 JOBS=1 ACCT= LOCAL=0 function usage { echo >&2 echo >&2 "usage: $0 [options] " echo >&2 echo >&2 " Arvados cluster name" echo >&2 echo >&2 "$0 options:" echo >&2 " -p, --port SSH port to use (default 22)" echo >&2 " --acct Account to log in with" echo >&2 " -d, --debug Enable debug output" echo >&2 " -h, --help Display this help and exit" echo >&2 " -s, --scopes Print required scopes to run tests" echo >&2 " -j, --jobs Allow N jobs at once; 1 job with no arg." echo >&2 " -l, --local Run arvados-cwl-runner locally, not on shell." echo >&2 } function print_scopes { echo >&2 " Required scope for the token used to run the tests:" echo >&2 echo >&2 " arv api_client_authorization create_system_auth --scopes " echo >&2 "[\"GET /arvados/v1/virtual_machines\"," echo >&2 "\"GET /arvados/v1/keep_services\"," echo >&2 "\"GET /arvados/v1/keep_services/\"," echo >&2 "\"GET /arvados/v1/groups\"," echo >&2 "\"GET /arvados/v1/groups/\"," echo >&2 "\"GET /arvados/v1/links\"," echo >&2 "\"GET /arvados/v1/collections\"," echo >&2 "\"POST /arvados/v1/collections\"," echo >&2 "\"POST /arvados/v1/links\"," echo >&2 "\"GET /arvados/v1/users/current\"," echo >&2 "\"POST /arvados/v1/users/current\"," echo >&2 "\"GET /arvados/v1/jobs\"," echo >&2 "\"POST /arvados/v1/jobs\"," echo >&2 "\"GET /arvados/v1/pipeline_instances\"," echo >&2 "\"GET /arvados/v1/pipeline_instances/\"," echo >&2 "\"POST /arvados/v1/pipeline_instances\"," echo >&2 "\"GET /arvados/v1/collections/\"," echo >&2 "\"POST /arvados/v1/collections/\"," echo >&2 "\"GET /arvados/v1/container_requests\"," echo >&2 "\"GET /arvados/v1/container_requests/\"," echo >&2 "\"POST /arvados/v1/container_requests\"," echo >&2 "\"POST /arvados/v1/container_requests/\"," echo >&2 "\"GET /arvados/v1/containers\"," echo >&2 "\"GET /arvados/v1/containers/\"," echo >&2 "\"GET /arvados/v1/repositories\"," echo >&2 "\"GET /arvados/v1/repositories/\"," echo >&2 "\"GET /arvados/v1/logs\" ]" echo >&2 } # NOTE: This requires GNU getopt (part of the util-linux package on Debian-based distros). TEMP=`getopt -o hdlp:sj: \ --long help,scopes,debug,local,port:,acct:,jobs: \ -n "$0" -- "$@"` if [ $? != 0 ] ; then echo "Use -h for help"; exit 1 ; fi # Note the quotes around `$TEMP': they are essential! eval set -- "$TEMP" while [ $# -ge 1 ] do case $1 in -p | --port) SSH_PORT="$2"; shift 2 ;; --acct) ACCT="$2"; shift 2 ;; -d | --debug) DEBUG=1 shift ;; -s | --scopes) print_scopes exit 0 ;; -j | --jobs) JOBS="$2"; shift 2 ;; -l | --local) LOCAL=1 shift ;; --) shift break ;; *) usage exit 1 ;; esac done IDENTIFIER=$1 if [[ "$IDENTIFIER" == '' ]]; then usage exit 1 fi EXITCODE=0 COLUMNS=80 PUPPET_AGENT=' now() { date +%s; } let endtime="$(now) + 600" while [ "$endtime" -gt "$(now)" ]; do puppet agent --test --detailed-exitcodes agent_exitcode=$? if [ 0 = "$agent_exitcode" ] || [ 2 = "$agent_exitcode" ]; then break else sleep 10s fi done exit ${agent_exitcode:-99} ' title () { date=`date +'%Y-%m-%d %H:%M:%S'` printf "%s\n" "$date $1" } function run_command() { node=$1 return_var=$2 command=$3 if [[ "$LOCAL" == "0" ]]; then title "Running '${command/ARVADOS_API_TOKEN=* /ARVADOS_API_TOKEN=suppressed }' on $node" TMP_FILE=`mktemp` if [[ "$DEBUG" != "0" ]]; then echo ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" | tee $TMP_FILE ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" | tee $TMP_FILE ECODE=$? else ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" > $TMP_FILE 2>&1 ECODE=$? fi if [[ "$ECODE" != "255" && "$ECODE" != "0" ]]; then # Ssh exits 255 if the connection timed out. Just ignore that, it's possible that this node is # a shell node that is down. title "ERROR running command on $node: exit code $ECODE" if [[ "$DEBUG" == "0" ]]; then title "Command output follows:" cat $TMP_FILE fi fi if [[ "$ECODE" == "255" ]]; then title "Connection denied or timed out" fi else title "Running '${command/ARVADOS_API_TOKEN=* /ARVADOS_API_TOKEN=suppressed }' locally" TMP_FILE=`mktemp` if [[ "$DEBUG" != "0" ]]; then bash -c "$command" | tee $TMP_FILE ECODE=$? else bash -c "$command" > $TMP_FILE 2>&1 ECODE=$? fi if [[ "$ECODE" != "0" ]]; then title "ERROR running command locally: exit code $ECODE" if [[ "$DEBUG" == "0" ]]; then title "Command output follows:" cat $TMP_FILE fi fi fi rm -f $TMP_FILE eval "$return_var=$ECODE" } if [[ "$LOCAL" == "1" && "$ACCT" == "" ]]; then ACCT=$USER fi if [[ "$LOCAL" == "0" && "$ACCT" == "" ]]; then ACCT=ci fi title "Loading ARVADOS_API_HOST and ARVADOS_API_TOKEN" if [[ -f "$HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf" ]]; then . $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf else title "WARNING: $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf not found." fi if [[ "$ARVADOS_API_HOST" == "" ]] || [[ "$ARVADOS_API_TOKEN" == "" ]]; then title "ERROR: ARVADOS_API_HOST and/or ARVADOS_API_TOKEN environment variables are not set." exit 1 fi run_command shell.$IDENTIFIER ECODE "if [[ ! -e common-workflow-language ]]; then git clone --depth 1 https://github.com/common-workflow-language/common-workflow-language.git; fi" if [[ "$ECODE" != "0" ]]; then echo "Failed to git clone --depth 1 https://github.com/common-workflow-language/common-workflow-language.git" exit $ECODE fi run_command shell.$IDENTIFIER ECODE "printf \"%s\n%s\n\" '#!/bin/sh' 'exec arvados-cwl-runner --api containers --compute-checksum --disable-reuse --eval-timeout 60 \"\$@\"' > ~$ACCT/arvados-cwl-runner-with-checksum.sh; chmod 755 ~$ACCT/arvados-cwl-runner-with-checksum.sh" if [[ "$ECODE" != "0" ]]; then echo "Failed to create ~$ACCT/arvados-cwl-runner-with-checksum.sh" exit $ECODE fi run_command shell.$IDENTIFIER ECODE "cd common-workflow-language; git pull; ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ARVADOS_API_HOST_INSECURE=$ARVADOS_API_HOST_INSECURE ./run_test.sh -j$JOBS --timeout=900 RUNNER=/home/$ACCT/arvados-cwl-runner-with-checksum.sh -Sdocker_entrypoint" if [[ "$ECODE" != "0" ]]; then echo "Failed ./run_test.sh -j$JOBS RUNNER=/home/$ACCT/arvados-cwl-runner-with-checksum.sh" exit $ECODE fi run_command shell.$IDENTIFIER ECODE "if [[ ! -e arvados ]]; then ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ARVADOS_API_HOST_INSECURE=$ARVADOS_API_HOST_INSECURE git clone --depth 1 https://github.com/arvados/arvados.git; fi" if [[ "$ECODE" != "0" ]]; then echo "Failed to git clone --depth 1 https://git.arvados.org/arvados.git" exit $ECODE fi run_command shell.$IDENTIFIER ECODE "cd arvados/sdk/cwl/tests; export ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ARVADOS_API_HOST_INSECURE=$ARVADOS_API_HOST_INSECURE && git pull && ./arvados-tests.sh -j$JOBS" exit $ECODE